Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3413 and GFF3414 are separated by 80 nucleotides GFF3414 and GFF3415 overlap by 1 nucleotides GFF3415 and GFF3416 are separated by 123 nucleotides
GFF3413 - FIG002776: hypothetical protein, at 178,076 to 179,197
GFF3413
GFF3414 - Sensor protein PhoQ (EC 2.7.13.3), at 179,278 to 180,741
GFF3414
GFF3415 - Transcriptional regulatory protein PhoP, at 180,741 to 181,415
GFF3415
GFF3416 - Adenylosuccinate lyase (EC 4.3.2.2), at 181,539 to 182,909
GFF3416
Position (kb)
179
180
181 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 178.289 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.442 kb on - strand, within GFF3413 at 178.454 kb on - strand, within GFF3413 at 178.515 kb on + strand, within GFF3413 at 178.518 kb on + strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.629 kb on + strand, within GFF3413 at 178.799 kb on - strand, within GFF3413 at 178.802 kb on - strand, within GFF3413 at 178.877 kb on - strand, within GFF3413 at 179.126 kb on + strand at 179.184 kb on - strand at 179.191 kb on - strand at 179.218 kb on + strand at 179.218 kb on + strand at 179.373 kb on - strand at 179.425 kb on + strand, within GFF3414 at 179.582 kb on - strand, within GFF3414 at 179.675 kb on + strand, within GFF3414 at 179.741 kb on - strand, within GFF3414 at 179.877 kb on + strand, within GFF3414 at 180.128 kb on - strand, within GFF3414 at 180.153 kb on - strand, within GFF3414 at 180.153 kb on - strand, within GFF3414 at 180.174 kb on + strand, within GFF3414 at 180.177 kb on - strand, within GFF3414 at 180.255 kb on + strand, within GFF3414 at 180.305 kb on - strand, within GFF3414 at 180.365 kb on - strand, within GFF3414 at 180.561 kb on + strand, within GFF3414 at 180.736 kb on - strand at 180.849 kb on - strand, within GFF3415 at 180.877 kb on + strand, within GFF3415 at 181.079 kb on + strand, within GFF3415 at 181.257 kb on + strand, within GFF3415 at 181.298 kb on - strand, within GFF3415 at 181.405 kb on - strand at 181.483 kb on + strand at 181.541 kb on - strand at 181.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 178,289 + GFF3413 0.19 -0.2 178,441 + GFF3413 0.33 -0.2 178,441 + GFF3413 0.33 -0.1 178,442 - GFF3413 0.33 +0.5 178,454 - GFF3413 0.34 +0.8 178,515 + GFF3413 0.39 +0.5 178,518 + GFF3413 0.39 +0.3 178,519 - GFF3413 0.39 +0.1 178,519 - GFF3413 0.39 +0.2 178,523 - GFF3413 0.40 +0.4 178,523 - GFF3413 0.40 -0.0 178,629 + GFF3413 0.49 +0.3 178,799 - GFF3413 0.64 +0.1 178,802 - GFF3413 0.65 +1.0 178,877 - GFF3413 0.71 +0.2 179,126 + +0.4 179,184 - -0.3 179,191 - +0.3 179,218 + -0.3 179,218 + +0.5 179,373 - -2.6 179,425 + GFF3414 0.10 -1.1 179,582 - GFF3414 0.21 -2.3 179,675 + GFF3414 0.27 -2.4 179,741 - GFF3414 0.32 -2.3 179,877 + GFF3414 0.41 -1.5 180,128 - GFF3414 0.58 -2.9 180,153 - GFF3414 0.60 -2.3 180,153 - GFF3414 0.60 -2.2 180,174 + GFF3414 0.61 -2.6 180,177 - GFF3414 0.61 -2.2 180,255 + GFF3414 0.67 -3.0 180,305 - GFF3414 0.70 -2.5 180,365 - GFF3414 0.74 -2.3 180,561 + GFF3414 0.88 -3.0 180,736 - -2.3 180,849 - GFF3415 0.16 -1.9 180,877 + GFF3415 0.20 -1.7 181,079 + GFF3415 0.50 -2.2 181,257 + GFF3415 0.76 -2.3 181,298 - GFF3415 0.83 -3.8 181,405 - -1.9 181,483 + -0.6 181,541 - -0.7 181,545 - +0.7
Or see this region's nucleotide sequence