Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF338 and GFF339 overlap by 8 nucleotides GFF339 and GFF340 are separated by 94 nucleotides
GFF338 - Putative sensory transducer, at 54,116 to 54,880
GFF338
GFF339 - YqeJ protein, at 54,873 to 55,355
GFF339
GFF340 - autotransporter, at 55,450 to 58,317
GFF340
Position (kb) 54
55
56 Strain fitness (log2 ratio) -1
0
1
2
3 at 53.961 kb on + strand at 53.962 kb on - strand at 53.977 kb on - strand at 53.995 kb on + strand at 54.004 kb on + strand at 54.054 kb on - strand at 54.086 kb on + strand at 54.127 kb on - strand at 54.365 kb on - strand, within GFF338 at 54.502 kb on + strand, within GFF338 at 54.502 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.527 kb on + strand, within GFF338 at 54.528 kb on - strand, within GFF338 at 54.532 kb on - strand, within GFF338 at 54.583 kb on + strand, within GFF338 at 54.584 kb on - strand, within GFF338 at 54.585 kb on + strand, within GFF338 at 54.710 kb on - strand, within GFF338 at 55.138 kb on - strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.141 kb on + strand, within GFF339 at 55.271 kb on + strand, within GFF339 at 55.272 kb on - strand, within GFF339 at 55.494 kb on - strand at 55.531 kb on + strand at 55.644 kb on + strand at 55.645 kb on - strand at 55.645 kb on - strand at 55.647 kb on + strand at 55.724 kb on + strand at 55.725 kb on - strand at 55.782 kb on + strand, within GFF340 at 55.783 kb on - strand, within GFF340 at 55.826 kb on - strand, within GFF340 at 55.889 kb on + strand, within GFF340 at 55.965 kb on + strand, within GFF340 at 55.980 kb on - strand, within GFF340 at 56.001 kb on - strand, within GFF340 at 56.001 kb on - strand, within GFF340 at 56.026 kb on - strand, within GFF340 at 56.031 kb on - strand, within GFF340 at 56.084 kb on + strand, within GFF340 at 56.145 kb on + strand, within GFF340 at 56.200 kb on + strand, within GFF340 at 56.207 kb on + strand, within GFF340 at 56.207 kb on + strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.208 kb on - strand, within GFF340 at 56.227 kb on + strand, within GFF340 at 56.322 kb on - strand, within GFF340
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 53,961 + +0.6 53,962 - +0.4 53,977 - -0.6 53,995 + -1.1 54,004 + +0.1 54,054 - +0.1 54,086 + -0.1 54,127 - -0.2 54,365 - GFF338 0.33 -0.7 54,502 + GFF338 0.50 +0.0 54,502 + GFF338 0.50 +0.8 54,527 + GFF338 0.54 +0.2 54,527 + GFF338 0.54 +0.1 54,528 - GFF338 0.54 -0.2 54,532 - GFF338 0.54 +0.5 54,583 + GFF338 0.61 +0.4 54,584 - GFF338 0.61 +0.2 54,585 + GFF338 0.61 -0.0 54,710 - GFF338 0.78 -0.5 55,138 - GFF339 0.55 -0.6 55,141 + GFF339 0.55 -0.3 55,141 + GFF339 0.55 +0.0 55,271 + GFF339 0.82 -0.6 55,272 - GFF339 0.83 -0.2 55,494 - +0.1 55,531 + -0.6 55,644 + -0.1 55,645 - +0.3 55,645 - +2.9 55,647 + +0.1 55,724 + -0.2 55,725 - +0.1 55,782 + GFF340 0.12 +1.6 55,783 - GFF340 0.12 +1.2 55,826 - GFF340 0.13 -0.6 55,889 + GFF340 0.15 -0.0 55,965 + GFF340 0.18 +0.2 55,980 - GFF340 0.18 +0.1 56,001 - GFF340 0.19 +1.2 56,001 - GFF340 0.19 +0.4 56,026 - GFF340 0.20 -0.2 56,031 - GFF340 0.20 +0.1 56,084 + GFF340 0.22 -0.4 56,145 + GFF340 0.24 -0.2 56,200 + GFF340 0.26 -0.2 56,207 + GFF340 0.26 -0.3 56,207 + GFF340 0.26 +0.0 56,208 - GFF340 0.26 -0.4 56,208 - GFF340 0.26 +0.4 56,208 - GFF340 0.26 +0.2 56,227 + GFF340 0.27 -0.1 56,322 - GFF340 0.30 -0.2
Or see this region's nucleotide sequence