Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3308

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3307 and GFF3308 are separated by 601 nucleotidesGFF3308 and GFF3309 are separated by 45 nucleotides GFF3307 - N-acetylmannosamine-6-phosphate 2-epimerase (EC 5.1.3.9), at 80,141 to 80,737 GFF3307 GFF3308 - Sialic acid-induced transmembrane protein YjhT(NanM), possible mutarotase, at 81,339 to 82,487 GFF3308 GFF3309 - N-acetylneuraminic acid outer membrane channel protein NanC, at 82,533 to 83,225 GFF3309 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1at 80.402 kb on + strand, within GFF3307at 80.403 kb on - strand, within GFF3307at 80.559 kb on - strand, within GFF3307at 80.618 kb on - strand, within GFF3307at 80.835 kb on - strandat 80.835 kb on - strandat 80.835 kb on - strandat 80.835 kb on - strandat 80.927 kb on + strandat 80.927 kb on + strandat 81.169 kb on - strandat 82.063 kb on + strand, within GFF3308at 82.108 kb on + strand, within GFF3308

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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80,402 + GFF3307 0.44 +0.1
80,403 - GFF3307 0.44 -0.9
80,559 - GFF3307 0.70 +0.2
80,618 - GFF3307 0.80 +0.3
80,835 - +0.3
80,835 - -0.4
80,835 - +0.1
80,835 - -0.2
80,927 + +0.2
80,927 + -0.1
81,169 - -0.3
82,063 + GFF3308 0.63 -0.2
82,108 + GFF3308 0.67 -0.8

Or see this region's nucleotide sequence