Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3299 and GFF3300 overlap by 4 nucleotides GFF3300 and GFF3301 are separated by 58 nucleotides GFF3301 and GFF3302 are separated by 60 nucleotides GFF3302 and GFF3303 are separated by 229 nucleotides
GFF3299 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 68,374 to 69,012
GFF3299
GFF3300 - Putative secreted protein, at 69,009 to 69,404
GFF3300
GFF3301 - Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88), at 69,463 to 73,425
GFF3301
GFF3302 - FIG00639374: hypothetical protein, at 73,486 to 73,617
GFF3302
GFF3303 - Proline/sodium symporter PutP (TC 2.A.21.2.1) @ Propionate/sodium symporter, at 73,847 to 75,355
GFF3303
Position (kb) 69
70
71
72
73
74 Strain fitness (log2 ratio) -2
-1
0
1
2 at 68.548 kb on + strand, within GFF3299 at 68.569 kb on + strand, within GFF3299 at 68.664 kb on + strand, within GFF3299 at 68.775 kb on - strand, within GFF3299 at 68.787 kb on - strand, within GFF3299 at 68.890 kb on + strand, within GFF3299 at 68.985 kb on + strand at 68.985 kb on + strand at 69.404 kb on + strand at 69.404 kb on + strand at 69.448 kb on + strand at 69.449 kb on - strand at 69.551 kb on - strand at 69.553 kb on - strand at 69.553 kb on - strand at 69.845 kb on - strand at 69.845 kb on - strand at 70.009 kb on + strand, within GFF3301 at 70.010 kb on - strand, within GFF3301 at 70.021 kb on - strand, within GFF3301 at 70.198 kb on - strand, within GFF3301 at 70.209 kb on - strand, within GFF3301 at 70.261 kb on - strand, within GFF3301 at 70.266 kb on + strand, within GFF3301 at 70.267 kb on - strand, within GFF3301 at 70.270 kb on + strand, within GFF3301 at 70.270 kb on + strand, within GFF3301 at 70.270 kb on + strand, within GFF3301 at 70.271 kb on - strand, within GFF3301 at 70.271 kb on - strand, within GFF3301 at 70.338 kb on + strand, within GFF3301 at 70.341 kb on - strand, within GFF3301 at 70.341 kb on - strand, within GFF3301 at 70.616 kb on - strand, within GFF3301 at 70.616 kb on - strand, within GFF3301 at 70.759 kb on - strand, within GFF3301 at 71.412 kb on + strand, within GFF3301 at 71.718 kb on + strand, within GFF3301 at 71.764 kb on + strand, within GFF3301 at 71.772 kb on - strand, within GFF3301 at 71.864 kb on + strand, within GFF3301 at 71.865 kb on - strand, within GFF3301 at 71.904 kb on - strand, within GFF3301 at 71.939 kb on + strand, within GFF3301 at 72.029 kb on + strand, within GFF3301 at 72.179 kb on + strand, within GFF3301 at 72.180 kb on - strand, within GFF3301 at 72.441 kb on + strand, within GFF3301 at 72.465 kb on - strand, within GFF3301 at 72.576 kb on - strand, within GFF3301 at 72.809 kb on - strand, within GFF3301 at 72.809 kb on - strand, within GFF3301 at 72.874 kb on + strand, within GFF3301 at 72.889 kb on - strand, within GFF3301 at 73.268 kb on - strand at 73.287 kb on + strand at 73.307 kb on + strand at 73.308 kb on - strand at 73.311 kb on + strand at 73.615 kb on + strand at 73.769 kb on + strand at 73.769 kb on + strand at 73.769 kb on + strand at 73.769 kb on + strand at 73.769 kb on + strand at 73.769 kb on + strand at 73.770 kb on - strand at 73.852 kb on + strand at 73.856 kb on - strand at 73.949 kb on + strand at 74.011 kb on + strand, within GFF3303 at 74.161 kb on + strand, within GFF3303 at 74.206 kb on + strand, within GFF3303 at 74.207 kb on - strand, within GFF3303 at 74.207 kb on - strand, within GFF3303 at 74.260 kb on + strand, within GFF3303 at 74.264 kb on + strand, within GFF3303 at 74.264 kb on + strand, within GFF3303 at 74.265 kb on - strand, within GFF3303
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 68,548 + GFF3299 0.27 +0.3 68,569 + GFF3299 0.31 +0.2 68,664 + GFF3299 0.45 -0.0 68,775 - GFF3299 0.63 +0.2 68,787 - GFF3299 0.65 -0.1 68,890 + GFF3299 0.81 +0.1 68,985 + -0.0 68,985 + -0.4 69,404 + -0.7 69,404 + +0.0 69,448 + -0.1 69,449 - +0.7 69,551 - -0.2 69,553 - -0.4 69,553 - -0.3 69,845 - -2.0 69,845 - -1.1 70,009 + GFF3301 0.14 +0.1 70,010 - GFF3301 0.14 -0.3 70,021 - GFF3301 0.14 -0.5 70,198 - GFF3301 0.19 -0.1 70,209 - GFF3301 0.19 +0.5 70,261 - GFF3301 0.20 +0.2 70,266 + GFF3301 0.20 -0.4 70,267 - GFF3301 0.20 -0.2 70,270 + GFF3301 0.20 -0.3 70,270 + GFF3301 0.20 -0.5 70,270 + GFF3301 0.20 -0.4 70,271 - GFF3301 0.20 -0.2 70,271 - GFF3301 0.20 -0.6 70,338 + GFF3301 0.22 -0.7 70,341 - GFF3301 0.22 -0.3 70,341 - GFF3301 0.22 +0.2 70,616 - GFF3301 0.29 -0.0 70,616 - GFF3301 0.29 -0.2 70,759 - GFF3301 0.33 -0.1 71,412 + GFF3301 0.49 -0.2 71,718 + GFF3301 0.57 +0.3 71,764 + GFF3301 0.58 -0.4 71,772 - GFF3301 0.58 +0.2 71,864 + GFF3301 0.61 -0.0 71,865 - GFF3301 0.61 +2.0 71,904 - GFF3301 0.62 -0.1 71,939 + GFF3301 0.62 -1.7 72,029 + GFF3301 0.65 +0.0 72,179 + GFF3301 0.69 -0.7 72,180 - GFF3301 0.69 +0.3 72,441 + GFF3301 0.75 -0.1 72,465 - GFF3301 0.76 -0.5 72,576 - GFF3301 0.79 -0.1 72,809 - GFF3301 0.84 -0.2 72,809 - GFF3301 0.84 -0.1 72,874 + GFF3301 0.86 -1.2 72,889 - GFF3301 0.86 -0.8 73,268 - -0.1 73,287 + +0.4 73,307 + -0.3 73,308 - -0.4 73,311 + +0.6 73,615 + +0.3 73,769 + -0.3 73,769 + +0.1 73,769 + +0.5 73,769 + -0.2 73,769 + +0.4 73,769 + +0.3 73,770 - -0.1 73,852 + +0.3 73,856 - +0.5 73,949 + -0.1 74,011 + GFF3303 0.11 +0.1 74,161 + GFF3303 0.21 +0.0 74,206 + GFF3303 0.24 +0.2 74,207 - GFF3303 0.24 -0.1 74,207 - GFF3303 0.24 -0.4 74,260 + GFF3303 0.27 -0.2 74,264 + GFF3303 0.28 +0.2 74,264 + GFF3303 0.28 -0.0 74,265 - GFF3303 0.28 +0.0
Or see this region's nucleotide sequence