Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3284 and GFF3285 are separated by 9 nucleotides GFF3285 and GFF3286 are separated by 13 nucleotides
GFF3284 - 4-hydroxyphenylacetate symporter, major facilitator superfamily (MFS), at 55,902 to 57,278
GFF3284
GFF3285 - Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family, at 57,288 to 58,184
GFF3285
GFF3286 - Ribonuclease Z (EC 3.1.26.11), at 58,198 to 59,136
GFF3286
Position (kb) 57
58
59 Strain fitness (log2 ratio) -1
0
1 at 56.332 kb on + strand, within GFF3284 at 56.444 kb on + strand, within GFF3284 at 56.445 kb on - strand, within GFF3284 at 56.445 kb on - strand, within GFF3284 at 56.465 kb on - strand, within GFF3284 at 56.531 kb on + strand, within GFF3284 at 56.713 kb on + strand, within GFF3284 at 56.714 kb on - strand, within GFF3284 at 56.721 kb on + strand, within GFF3284 at 56.722 kb on - strand, within GFF3284 at 56.722 kb on - strand, within GFF3284 at 56.723 kb on + strand, within GFF3284 at 56.750 kb on + strand, within GFF3284 at 56.768 kb on + strand, within GFF3284 at 57.287 kb on + strand at 57.287 kb on + strand at 57.287 kb on + strand at 57.287 kb on + strand at 57.288 kb on - strand at 57.317 kb on + strand at 57.545 kb on + strand, within GFF3285 at 57.791 kb on + strand, within GFF3285 at 57.881 kb on - strand, within GFF3285 at 57.881 kb on - strand, within GFF3285 at 58.218 kb on + strand at 58.392 kb on - strand, within GFF3286 at 58.459 kb on - strand, within GFF3286 at 58.491 kb on - strand, within GFF3286 at 58.545 kb on + strand, within GFF3286 at 58.546 kb on - strand, within GFF3286 at 58.550 kb on + strand, within GFF3286 at 58.699 kb on + strand, within GFF3286 at 58.699 kb on + strand, within GFF3286 at 58.701 kb on + strand, within GFF3286 at 58.818 kb on + strand, within GFF3286 at 58.918 kb on - strand, within GFF3286 at 59.022 kb on - strand, within GFF3286 at 59.115 kb on + strand at 59.115 kb on + strand at 59.123 kb on + strand at 59.123 kb on + strand at 59.134 kb on + strand at 59.134 kb on + strand at 59.135 kb on - strand at 59.135 kb on - strand at 59.139 kb on - strand at 59.139 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 56,332 + GFF3284 0.31 +0.6 56,444 + GFF3284 0.39 +0.4 56,445 - GFF3284 0.39 -0.2 56,445 - GFF3284 0.39 +0.2 56,465 - GFF3284 0.41 -0.1 56,531 + GFF3284 0.46 -0.2 56,713 + GFF3284 0.59 -0.1 56,714 - GFF3284 0.59 -0.2 56,721 + GFF3284 0.59 +0.5 56,722 - GFF3284 0.60 -0.5 56,722 - GFF3284 0.60 -0.6 56,723 + GFF3284 0.60 -0.0 56,750 + GFF3284 0.62 +0.1 56,768 + GFF3284 0.63 -0.8 57,287 + -0.4 57,287 + +0.6 57,287 + -0.1 57,287 + -0.3 57,288 - -0.1 57,317 + +1.3 57,545 + GFF3285 0.29 +0.3 57,791 + GFF3285 0.56 -0.6 57,881 - GFF3285 0.66 -0.8 57,881 - GFF3285 0.66 -1.3 58,218 + +0.7 58,392 - GFF3286 0.21 -0.2 58,459 - GFF3286 0.28 -0.1 58,491 - GFF3286 0.31 +0.2 58,545 + GFF3286 0.37 +0.0 58,546 - GFF3286 0.37 +0.4 58,550 + GFF3286 0.37 +0.0 58,699 + GFF3286 0.53 -0.2 58,699 + GFF3286 0.53 -0.5 58,701 + GFF3286 0.54 +0.3 58,818 + GFF3286 0.66 -0.1 58,918 - GFF3286 0.77 -0.3 59,022 - GFF3286 0.88 +0.7 59,115 + +0.6 59,115 + -0.5 59,123 + +0.0 59,123 + -0.5 59,134 + -0.2 59,134 + -0.3 59,135 - +0.1 59,135 - -0.1 59,139 - +0.3 59,139 - +0.1
Or see this region's nucleotide sequence