Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3279 and GFF3280 are separated by 1 nucleotides GFF3280 and GFF3281 are separated by 9 nucleotides GFF3281 and GFF3282 are separated by 142 nucleotides
GFF3279 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 51,373 to 52,839
GFF3279
GFF3280 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase (EC 1.13.11.15), at 52,841 to 53,692
GFF3280
GFF3281 - 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10), at 53,702 to 54,082
GFF3281
GFF3282 - 2-oxo-hepta-3-ene-1,7-dioic acid hydratase (EC 4.2.-.-), at 54,225 to 55,028
GFF3282
Position (kb) 52
53
54 Strain fitness (log2 ratio) -1
0
1 at 52.066 kb on - strand, within GFF3279 at 52.244 kb on - strand, within GFF3279 at 52.368 kb on + strand, within GFF3279 at 52.369 kb on - strand, within GFF3279 at 52.611 kb on + strand, within GFF3279 at 52.759 kb on + strand at 52.762 kb on - strand at 53.038 kb on + strand, within GFF3280 at 53.039 kb on - strand, within GFF3280 at 53.069 kb on - strand, within GFF3280 at 53.108 kb on + strand, within GFF3280 at 53.115 kb on - strand, within GFF3280 at 53.238 kb on - strand, within GFF3280 at 53.351 kb on + strand, within GFF3280 at 53.352 kb on - strand, within GFF3280 at 53.607 kb on - strand at 53.713 kb on + strand at 54.048 kb on - strand at 54.072 kb on + strand at 54.212 kb on - strand at 54.224 kb on + strand at 54.267 kb on - strand at 54.329 kb on + strand, within GFF3282 at 54.342 kb on + strand, within GFF3282 at 54.343 kb on - strand, within GFF3282 at 54.462 kb on + strand, within GFF3282 at 54.463 kb on - strand, within GFF3282 at 54.622 kb on - strand, within GFF3282
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 52,066 - GFF3279 0.47 -0.0 52,244 - GFF3279 0.59 -0.6 52,368 + GFF3279 0.68 -0.5 52,369 - GFF3279 0.68 +0.0 52,611 + GFF3279 0.84 +1.3 52,759 + -0.1 52,762 - +0.2 53,038 + GFF3280 0.23 +0.7 53,039 - GFF3280 0.23 +0.6 53,069 - GFF3280 0.27 +0.6 53,108 + GFF3280 0.31 +1.2 53,115 - GFF3280 0.32 -0.3 53,238 - GFF3280 0.47 +1.6 53,351 + GFF3280 0.60 +1.2 53,352 - GFF3280 0.60 -0.6 53,607 - +1.4 53,713 + +0.1 54,048 - -1.3 54,072 + -0.2 54,212 - +0.0 54,224 + -0.1 54,267 - -0.1 54,329 + GFF3282 0.13 -0.2 54,342 + GFF3282 0.15 -0.3 54,343 - GFF3282 0.15 +0.4 54,462 + GFF3282 0.29 -1.7 54,463 - GFF3282 0.30 +0.8 54,622 - GFF3282 0.49 -0.1
Or see this region's nucleotide sequence