Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3241 and GFF3242 are separated by 4 nucleotides GFF3242 and GFF3243 overlap by 4 nucleotides GFF3243 and GFF3244 overlap by 46 nucleotides
GFF3241 - Paraquat-inducible protein A, at 15,793 to 17,046
GFF3241
GFF3242 - Paraquat-inducible protein B, at 17,051 to 18,691
GFF3242
GFF3243 - Paraquat-inducible protein B, at 18,688 to 19,251
GFF3243
GFF3244 - hypothetical protein, at 19,206 to 19,343
GFF3244
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.152 kb on - strand, within GFF3241 at 16.314 kb on + strand, within GFF3241 at 16.528 kb on + strand, within GFF3241 at 16.529 kb on - strand, within GFF3241 at 16.728 kb on + strand, within GFF3241 at 16.955 kb on + strand at 17.080 kb on - strand at 17.156 kb on + strand at 17.162 kb on + strand at 17.431 kb on + strand, within GFF3242 at 17.663 kb on - strand, within GFF3242 at 17.878 kb on + strand, within GFF3242 at 17.977 kb on + strand, within GFF3242 at 18.033 kb on + strand, within GFF3242 at 18.053 kb on - strand, within GFF3242 at 18.198 kb on - strand, within GFF3242 at 18.198 kb on - strand, within GFF3242 at 18.260 kb on + strand, within GFF3242 at 18.398 kb on - strand, within GFF3242 at 18.398 kb on - strand, within GFF3242 at 18.430 kb on + strand, within GFF3242 at 18.430 kb on + strand, within GFF3242 at 18.431 kb on - strand, within GFF3242 at 18.442 kb on + strand, within GFF3242 at 18.542 kb on + strand at 18.543 kb on - strand at 18.656 kb on - strand at 18.760 kb on + strand, within GFF3243 at 18.763 kb on + strand, within GFF3243 at 18.824 kb on + strand, within GFF3243 at 18.824 kb on + strand, within GFF3243 at 18.845 kb on + strand, within GFF3243 at 18.853 kb on + strand, within GFF3243 at 18.898 kb on + strand, within GFF3243 at 18.899 kb on - strand, within GFF3243 at 19.168 kb on + strand, within GFF3243 at 19.261 kb on - strand, within GFF3244 at 19.261 kb on - strand, within GFF3244 at 19.368 kb on + strand at 19.430 kb on + strand at 19.490 kb on + strand at 19.555 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 16,152 - GFF3241 0.29 -0.0 16,314 + GFF3241 0.42 -0.3 16,528 + GFF3241 0.59 +0.1 16,529 - GFF3241 0.59 +0.0 16,728 + GFF3241 0.75 -0.1 16,955 + +1.0 17,080 - +0.2 17,156 + +1.2 17,162 + +0.4 17,431 + GFF3242 0.23 -0.1 17,663 - GFF3242 0.37 -0.0 17,878 + GFF3242 0.50 -0.2 17,977 + GFF3242 0.56 -0.7 18,033 + GFF3242 0.60 -0.6 18,053 - GFF3242 0.61 +0.2 18,198 - GFF3242 0.70 +0.9 18,198 - GFF3242 0.70 +0.1 18,260 + GFF3242 0.74 +0.4 18,398 - GFF3242 0.82 +0.2 18,398 - GFF3242 0.82 +0.3 18,430 + GFF3242 0.84 +0.4 18,430 + GFF3242 0.84 -1.0 18,431 - GFF3242 0.84 +0.7 18,442 + GFF3242 0.85 -0.3 18,542 + -0.3 18,543 - -0.2 18,656 - -0.7 18,760 + GFF3243 0.13 +0.1 18,763 + GFF3243 0.13 +1.3 18,824 + GFF3243 0.24 -0.3 18,824 + GFF3243 0.24 -0.5 18,845 + GFF3243 0.28 -0.1 18,853 + GFF3243 0.29 -0.2 18,898 + GFF3243 0.37 +0.3 18,899 - GFF3243 0.37 -0.4 19,168 + GFF3243 0.85 +0.1 19,261 - GFF3244 0.40 -0.1 19,261 - GFF3244 0.40 -0.3 19,368 + -0.1 19,430 + -2.3 19,490 + -0.4 19,555 + -0.3
Or see this region's nucleotide sequence