Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3229
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
839 | + | GFF3228 | 0.10 | -1.0 | |
871 | - | GFF3228 | 0.16 | -2.4 | |
872 | + | GFF3228 | 0.16 | -0.7 | |
872 | + | GFF3228 | 0.16 | -1.8 | |
947 | + | GFF3228 | 0.29 | -1.3 | |
948 | - | GFF3228 | 0.29 | -0.3 | |
1,035 | + | GFF3228 | 0.44 | -1.4 | |
1,035 | + | GFF3228 | 0.44 | -1.8 | |
1,112 | + | GFF3228 | 0.57 | -1.5 | |
1,295 | + | GFF3228 | 0.88 | -1.6 | |
1,307 | - | -1.0 | |||
1,440 | - | -1.0 | |||
1,451 | + | -0.7 | |||
1,451 | + | -1.2 | |||
1,481 | + | -1.2 | |||
1,482 | - | -2.0 | |||
1,809 | - | -1.4 | |||
1,809 | - | -0.8 | |||
2,229 | - | GFF3229 | 0.40 | -2.0 | |
2,553 | + | GFF3229 | 0.74 | -0.7 | |
2,881 | + | -1.7 | |||
3,021 | - | -0.1 | |||
3,186 | + | GFF3230 | 0.45 | -2.2 | |
3,351 | + | -1.0 | |||
3,455 | - | -0.7 | |||
3,455 | - | -1.2 | |||
3,635 | + | GFF3231 | 0.29 | -0.7 |
Or see this region's nucleotide sequence