Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3192 and GFF3193 are separated by 3 nucleotides GFF3193 and GFF3194 are separated by 144 nucleotides GFF3194 and GFF3195 are separated by 41 nucleotides GFF3195 and GFF3196 are separated by 2 nucleotides GFF3196 and GFF3197 overlap by 4 nucleotides
GFF3192 - DedA family inner membrane protein YqjA, at 200,329 to 200,991
GFF3192
GFF3193 - Uncharacterized protein YqjB, at 200,995 to 201,378
GFF3193
GFF3194 - Periplasmic protein YqjC, at 201,523 to 201,891
GFF3194
GFF3195 - Uncharacterized membrane protein YqjD, at 201,933 to 202,238
GFF3195
GFF3196 - Inner membrane protein YqjE, at 202,241 to 202,639
GFF3196
GFF3197 - Inner membrane protein YqjK, at 202,636 to 202,935
GFF3197
Position (kb) 201
202 Strain fitness (log2 ratio) -1
0
1 at 200.656 kb on + strand, within GFF3192 at 200.657 kb on - strand, within GFF3192 at 200.872 kb on - strand, within GFF3192 at 200.878 kb on + strand, within GFF3192 at 200.878 kb on + strand, within GFF3192 at 200.892 kb on - strand, within GFF3192 at 200.995 kb on - strand at 201.047 kb on + strand, within GFF3193 at 201.201 kb on + strand, within GFF3193 at 201.284 kb on + strand, within GFF3193 at 201.296 kb on - strand, within GFF3193 at 201.439 kb on + strand at 201.443 kb on - strand at 201.443 kb on - strand at 201.565 kb on - strand, within GFF3194 at 201.578 kb on - strand, within GFF3194 at 201.583 kb on - strand, within GFF3194 at 201.583 kb on - strand, within GFF3194 at 201.614 kb on + strand, within GFF3194 at 201.614 kb on + strand, within GFF3194 at 201.627 kb on + strand, within GFF3194 at 201.837 kb on + strand, within GFF3194 at 202.155 kb on + strand, within GFF3195 at 202.220 kb on - strand at 202.350 kb on + strand, within GFF3196 at 202.767 kb on + strand, within GFF3197 at 202.775 kb on + strand, within GFF3197 at 202.812 kb on - strand, within GFF3197 at 202.842 kb on + strand, within GFF3197 at 202.842 kb on + strand, within GFF3197 at 202.842 kb on + strand, within GFF3197 at 202.843 kb on - strand, within GFF3197 at 202.843 kb on - strand, within GFF3197 at 202.843 kb on - strand, within GFF3197 at 202.843 kb on - strand, within GFF3197
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 200,656 + GFF3192 0.49 +0.1 200,657 - GFF3192 0.49 +0.4 200,872 - GFF3192 0.82 -0.8 200,878 + GFF3192 0.83 +0.5 200,878 + GFF3192 0.83 +0.4 200,892 - GFF3192 0.85 -0.5 200,995 - +0.5 201,047 + GFF3193 0.14 +0.4 201,201 + GFF3193 0.54 -0.3 201,284 + GFF3193 0.75 +0.7 201,296 - GFF3193 0.78 +0.8 201,439 + -0.2 201,443 - +0.0 201,443 - -0.5 201,565 - GFF3194 0.11 +0.0 201,578 - GFF3194 0.15 +0.3 201,583 - GFF3194 0.16 -0.2 201,583 - GFF3194 0.16 +0.1 201,614 + GFF3194 0.25 +0.3 201,614 + GFF3194 0.25 +0.1 201,627 + GFF3194 0.28 +0.0 201,837 + GFF3194 0.85 +1.0 202,155 + GFF3195 0.73 +0.1 202,220 - +0.7 202,350 + GFF3196 0.27 -0.4 202,767 + GFF3197 0.44 -0.2 202,775 + GFF3197 0.46 -0.2 202,812 - GFF3197 0.59 -0.3 202,842 + GFF3197 0.69 +0.1 202,842 + GFF3197 0.69 +0.3 202,842 + GFF3197 0.69 -0.3 202,843 - GFF3197 0.69 +0.2 202,843 - GFF3197 0.69 +0.3 202,843 - GFF3197 0.69 -0.0 202,843 - GFF3197 0.69 +0.2
Or see this region's nucleotide sequence