Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3166
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
166,912 | + | GFF3165 | 0.81 | -0.5 | |
166,921 | + | GFF3165 | 0.81 | -0.1 | |
167,095 | - | -0.2 | |||
167,095 | - | +0.5 | |||
167,245 | + | +0.5 | |||
167,246 | - | +0.2 | |||
167,509 | - | +0.1 | |||
167,573 | - | -0.0 | |||
167,695 | + | -0.2 | |||
167,940 | - | GFF3166 | 0.17 | -2.6 | |
167,987 | + | GFF3166 | 0.20 | -0.9 | |
168,250 | - | GFF3166 | 0.39 | -2.6 | |
168,358 | + | GFF3166 | 0.46 | -0.7 | |
168,359 | - | GFF3166 | 0.46 | -1.7 | |
168,383 | + | GFF3166 | 0.48 | -1.3 | |
168,719 | + | GFF3166 | 0.71 | +0.3 | |
168,798 | + | GFF3166 | 0.77 | -1.3 | |
168,799 | - | GFF3166 | 0.77 | -2.1 | |
168,802 | - | GFF3166 | 0.77 | -2.3 | |
169,051 | + | -2.7 | |||
169,072 | - | -2.0 | |||
169,167 | - | -0.0 | |||
169,167 | - | +0.4 | |||
169,172 | - | +0.4 | |||
169,172 | - | +0.0 | |||
169,172 | - | -0.0 | |||
169,232 | - | +0.4 | |||
169,306 | - | +0.1 | |||
169,343 | - | +0.9 | |||
169,462 | + | GFF3167 | 0.10 | +0.2 | |
169,463 | - | GFF3167 | 0.10 | -0.1 | |
169,618 | + | GFF3167 | 0.16 | -1.1 | |
169,635 | + | GFF3167 | 0.16 | +0.3 | |
169,636 | - | GFF3167 | 0.16 | +0.1 | |
169,637 | + | GFF3167 | 0.16 | +0.0 | |
169,638 | - | GFF3167 | 0.16 | -0.0 | |
169,751 | + | GFF3167 | 0.20 | -0.2 | |
169,834 | - | GFF3167 | 0.23 | -0.1 | |
169,923 | + | GFF3167 | 0.26 | -0.0 |
Or see this region's nucleotide sequence