Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3147 and GFF3148 overlap by 4 nucleotides GFF3148 and GFF3149 are separated by 206 nucleotides GFF3149 and GFF3150 are separated by 212 nucleotides GFF3150 and GFF3151 are separated by 5 nucleotides
GFF3147 - FIG074102: hypothetical protein, at 152,450 to 152,872
GFF3147
GFF3148 - ADP-ribose pyrophosphatase (EC 3.6.1.13), at 152,869 to 153,501
GFF3148
GFF3149 - Type I secretion outer membrane protein, TolC precursor, at 153,708 to 155,177
GFF3149
GFF3150 - UPF0441 protein ygiB, at 155,390 to 156,061
GFF3150
GFF3151 - Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1, at 156,067 to 157,230
GFF3151
Position (kb) 153
154
155
156 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 152.744 kb on + strand, within GFF3147 at 153.007 kb on - strand, within GFF3148 at 153.037 kb on - strand, within GFF3148 at 153.076 kb on - strand, within GFF3148 at 153.076 kb on - strand, within GFF3148 at 153.113 kb on + strand, within GFF3148 at 153.205 kb on + strand, within GFF3148 at 153.522 kb on - strand at 153.529 kb on - strand at 153.529 kb on - strand at 153.603 kb on - strand at 153.684 kb on - strand at 153.763 kb on + strand at 153.764 kb on - strand at 153.921 kb on + strand, within GFF3149 at 153.950 kb on + strand, within GFF3149 at 153.998 kb on - strand, within GFF3149 at 154.005 kb on - strand, within GFF3149 at 154.065 kb on + strand, within GFF3149 at 154.116 kb on - strand, within GFF3149 at 154.146 kb on + strand, within GFF3149 at 154.169 kb on + strand, within GFF3149 at 154.174 kb on - strand, within GFF3149 at 154.255 kb on - strand, within GFF3149 at 154.430 kb on + strand, within GFF3149 at 154.658 kb on + strand, within GFF3149 at 154.683 kb on + strand, within GFF3149 at 154.683 kb on + strand, within GFF3149 at 154.744 kb on + strand, within GFF3149 at 154.744 kb on + strand, within GFF3149 at 154.744 kb on + strand, within GFF3149 at 154.744 kb on + strand, within GFF3149 at 154.757 kb on + strand, within GFF3149 at 154.763 kb on + strand, within GFF3149 at 154.795 kb on - strand, within GFF3149 at 154.795 kb on - strand, within GFF3149 at 154.796 kb on + strand, within GFF3149 at 154.962 kb on - strand, within GFF3149 at 155.015 kb on + strand, within GFF3149 at 155.016 kb on - strand, within GFF3149 at 155.094 kb on + strand at 155.097 kb on - strand at 155.179 kb on - strand at 155.221 kb on + strand at 155.222 kb on - strand at 155.251 kb on + strand at 155.251 kb on + strand at 155.270 kb on - strand at 155.280 kb on - strand at 155.361 kb on + strand at 155.361 kb on + strand at 155.362 kb on - strand at 155.362 kb on - strand at 155.365 kb on + strand at 155.389 kb on + strand at 155.486 kb on - strand, within GFF3150 at 155.630 kb on - strand, within GFF3150 at 155.634 kb on - strand, within GFF3150 at 155.869 kb on + strand, within GFF3150 at 155.869 kb on + strand, within GFF3150 at 155.884 kb on + strand, within GFF3150 at 156.062 kb on + strand at 156.082 kb on - strand at 156.141 kb on + strand at 156.141 kb on + strand at 156.141 kb on + strand at 156.141 kb on + strand at 156.141 kb on + strand at 156.141 kb on + strand at 156.146 kb on - strand at 156.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 152,744 + GFF3147 0.70 +0.1 153,007 - GFF3148 0.22 -0.3 153,037 - GFF3148 0.27 -0.4 153,076 - GFF3148 0.33 -0.2 153,076 - GFF3148 0.33 +0.4 153,113 + GFF3148 0.39 +1.1 153,205 + GFF3148 0.53 +0.5 153,522 - +0.3 153,529 - +0.7 153,529 - +0.2 153,603 - +0.1 153,684 - -1.5 153,763 + -2.8 153,764 - -2.0 153,921 + GFF3149 0.14 -0.6 153,950 + GFF3149 0.16 -2.1 153,998 - GFF3149 0.20 -0.3 154,005 - GFF3149 0.20 -1.1 154,065 + GFF3149 0.24 -1.4 154,116 - GFF3149 0.28 -1.0 154,146 + GFF3149 0.30 -1.1 154,169 + GFF3149 0.31 -2.1 154,174 - GFF3149 0.32 -1.0 154,255 - GFF3149 0.37 -2.5 154,430 + GFF3149 0.49 -3.5 154,658 + GFF3149 0.65 -1.2 154,683 + GFF3149 0.66 -1.0 154,683 + GFF3149 0.66 -1.0 154,744 + GFF3149 0.70 -0.9 154,744 + GFF3149 0.70 -1.6 154,744 + GFF3149 0.70 -0.2 154,744 + GFF3149 0.70 -2.1 154,757 + GFF3149 0.71 -0.3 154,763 + GFF3149 0.72 -0.9 154,795 - GFF3149 0.74 -4.2 154,795 - GFF3149 0.74 -1.4 154,796 + GFF3149 0.74 -0.1 154,962 - GFF3149 0.85 -0.4 155,015 + GFF3149 0.89 -1.5 155,016 - GFF3149 0.89 -1.5 155,094 + +0.3 155,097 - -0.3 155,179 - -0.4 155,221 + +0.4 155,222 - +0.0 155,251 + -0.7 155,251 + -0.6 155,270 - -0.0 155,280 - -0.0 155,361 + +0.1 155,361 + +0.0 155,362 - +0.5 155,362 - -0.3 155,365 + +0.1 155,389 + -0.1 155,486 - GFF3150 0.14 -0.2 155,630 - GFF3150 0.36 +0.8 155,634 - GFF3150 0.36 +0.0 155,869 + GFF3150 0.71 -0.5 155,869 + GFF3150 0.71 +0.1 155,884 + GFF3150 0.74 +0.4 156,062 + -0.4 156,082 - +0.4 156,141 + -0.4 156,141 + -0.2 156,141 + -0.1 156,141 + -0.1 156,141 + -1.1 156,141 + -0.4 156,146 - -0.6 156,175 + -0.0
Or see this region's nucleotide sequence