Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3139

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3137 and GFF3138 are separated by 151 nucleotidesGFF3138 and GFF3139 overlap by 4 nucleotidesGFF3139 and GFF3140 overlap by 7 nucleotidesGFF3140 and GFF3141 overlap by 4 nucleotidesGFF3141 and GFF3142 are separated by 31 nucleotides GFF3137 - Protein ygiW precursor, at 145,389 to 145,781 GFF3137 GFF3138 - Two-component system response regulator QseB, at 145,933 to 146,592 GFF3138 GFF3139 - Sensory histidine kinase QseC, at 146,589 to 147,938 GFF3139 GFF3140 - hypothetical protein, at 147,932 to 148,048 GFF3140 GFF3141 - Modulator of drug activity B, at 148,045 to 148,626 GFF3141 GFF3142 - FIG00896075: hypothetical protein, at 148,658 to 148,972 GFF3142 Position (kb) 146 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1at 145.626 kb on - strand, within GFF3137at 145.736 kb on + strand, within GFF3137at 145.786 kb on - strandat 145.819 kb on - strandat 145.819 kb on - strandat 145.821 kb on + strandat 145.821 kb on + strandat 145.872 kb on + strandat 145.872 kb on + strandat 145.896 kb on - strandat 145.949 kb on + strandat 145.966 kb on - strandat 145.996 kb on - strandat 146.065 kb on + strand, within GFF3138at 146.066 kb on - strand, within GFF3138at 146.076 kb on + strand, within GFF3138at 146.204 kb on + strand, within GFF3138at 146.205 kb on - strand, within GFF3138at 146.228 kb on + strand, within GFF3138at 146.229 kb on - strand, within GFF3138at 146.381 kb on + strand, within GFF3138at 146.414 kb on + strand, within GFF3138at 146.414 kb on + strand, within GFF3138at 146.452 kb on - strand, within GFF3138at 146.468 kb on - strand, within GFF3138at 146.468 kb on - strand, within GFF3138at 146.690 kb on - strandat 146.802 kb on - strand, within GFF3139at 146.828 kb on + strand, within GFF3139at 146.828 kb on + strand, within GFF3139at 146.950 kb on - strand, within GFF3139at 147.010 kb on - strand, within GFF3139at 147.014 kb on + strand, within GFF3139at 147.115 kb on + strand, within GFF3139at 147.223 kb on + strand, within GFF3139at 147.497 kb on + strand, within GFF3139at 147.557 kb on + strand, within GFF3139at 147.605 kb on + strand, within GFF3139at 147.622 kb on + strand, within GFF3139at 147.623 kb on - strand, within GFF3139at 147.721 kb on + strand, within GFF3139at 147.721 kb on + strand, within GFF3139at 147.785 kb on + strand, within GFF3139at 147.925 kb on + strandat 147.928 kb on + strandat 147.928 kb on + strandat 147.929 kb on - strandat 147.929 kb on - strandat 147.929 kb on - strandat 148.186 kb on + strand, within GFF3141at 148.288 kb on - strand, within GFF3141at 148.325 kb on - strand, within GFF3141at 148.401 kb on + strand, within GFF3141at 148.470 kb on - strand, within GFF3141at 148.476 kb on - strand, within GFF3141at 148.584 kb on + strandat 148.653 kb on + strandat 148.654 kb on - strandat 148.754 kb on - strand, within GFF3142at 148.898 kb on - strand, within GFF3142

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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145,626 - GFF3137 0.60 -0.1
145,736 + GFF3137 0.88 +1.1
145,786 - -0.9
145,819 - +0.2
145,819 - -0.1
145,821 + +0.0
145,821 + -0.1
145,872 + -0.4
145,872 + +0.7
145,896 - +0.1
145,949 + +0.9
145,966 - +0.4
145,996 - -0.5
146,065 + GFF3138 0.20 +0.2
146,066 - GFF3138 0.20 -1.2
146,076 + GFF3138 0.22 +0.4
146,204 + GFF3138 0.41 -0.3
146,205 - GFF3138 0.41 +0.2
146,228 + GFF3138 0.45 -0.7
146,229 - GFF3138 0.45 +0.4
146,381 + GFF3138 0.68 +0.4
146,414 + GFF3138 0.73 -0.5
146,414 + GFF3138 0.73 +0.3
146,452 - GFF3138 0.79 +0.2
146,468 - GFF3138 0.81 +0.3
146,468 - GFF3138 0.81 +0.9
146,690 - -2.8
146,802 - GFF3139 0.16 -0.5
146,828 + GFF3139 0.18 +0.1
146,828 + GFF3139 0.18 -1.2
146,950 - GFF3139 0.27 -0.8
147,010 - GFF3139 0.31 -1.3
147,014 + GFF3139 0.31 -1.3
147,115 + GFF3139 0.39 -0.9
147,223 + GFF3139 0.47 +0.5
147,497 + GFF3139 0.67 -1.4
147,557 + GFF3139 0.72 -1.1
147,605 + GFF3139 0.75 -0.5
147,622 + GFF3139 0.77 -1.0
147,623 - GFF3139 0.77 -0.5
147,721 + GFF3139 0.84 -3.3
147,721 + GFF3139 0.84 +0.4
147,785 + GFF3139 0.89 -1.3
147,925 + -0.4
147,928 + +0.3
147,928 + -0.5
147,929 - -0.3
147,929 - -0.4
147,929 - -0.2
148,186 + GFF3141 0.24 +0.0
148,288 - GFF3141 0.42 -0.1
148,325 - GFF3141 0.48 -0.0
148,401 + GFF3141 0.61 +0.2
148,470 - GFF3141 0.73 +0.2
148,476 - GFF3141 0.74 +0.5
148,584 + -0.8
148,653 + -0.2
148,654 - -0.2
148,754 - GFF3142 0.30 +0.8
148,898 - GFF3142 0.76 +0.1

Or see this region's nucleotide sequence