Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3137 and GFF3138 are separated by 151 nucleotides GFF3138 and GFF3139 overlap by 4 nucleotides GFF3139 and GFF3140 overlap by 7 nucleotides GFF3140 and GFF3141 overlap by 4 nucleotides GFF3141 and GFF3142 are separated by 31 nucleotides
GFF3137 - Protein ygiW precursor, at 145,389 to 145,781
GFF3137
GFF3138 - Two-component system response regulator QseB, at 145,933 to 146,592
GFF3138
GFF3139 - Sensory histidine kinase QseC, at 146,589 to 147,938
GFF3139
GFF3140 - hypothetical protein, at 147,932 to 148,048
GFF3140
GFF3141 - Modulator of drug activity B, at 148,045 to 148,626
GFF3141
GFF3142 - FIG00896075: hypothetical protein, at 148,658 to 148,972
GFF3142
Position (kb) 146
147
148 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 145.626 kb on - strand, within GFF3137 at 145.736 kb on + strand, within GFF3137 at 145.786 kb on - strand at 145.819 kb on - strand at 145.819 kb on - strand at 145.821 kb on + strand at 145.821 kb on + strand at 145.872 kb on + strand at 145.872 kb on + strand at 145.896 kb on - strand at 145.949 kb on + strand at 145.966 kb on - strand at 145.996 kb on - strand at 146.065 kb on + strand, within GFF3138 at 146.066 kb on - strand, within GFF3138 at 146.076 kb on + strand, within GFF3138 at 146.204 kb on + strand, within GFF3138 at 146.205 kb on - strand, within GFF3138 at 146.228 kb on + strand, within GFF3138 at 146.229 kb on - strand, within GFF3138 at 146.381 kb on + strand, within GFF3138 at 146.414 kb on + strand, within GFF3138 at 146.414 kb on + strand, within GFF3138 at 146.452 kb on - strand, within GFF3138 at 146.468 kb on - strand, within GFF3138 at 146.468 kb on - strand, within GFF3138 at 146.690 kb on - strand at 146.802 kb on - strand, within GFF3139 at 146.828 kb on + strand, within GFF3139 at 146.828 kb on + strand, within GFF3139 at 146.950 kb on - strand, within GFF3139 at 147.010 kb on - strand, within GFF3139 at 147.014 kb on + strand, within GFF3139 at 147.115 kb on + strand, within GFF3139 at 147.223 kb on + strand, within GFF3139 at 147.497 kb on + strand, within GFF3139 at 147.557 kb on + strand, within GFF3139 at 147.605 kb on + strand, within GFF3139 at 147.622 kb on + strand, within GFF3139 at 147.623 kb on - strand, within GFF3139 at 147.721 kb on + strand, within GFF3139 at 147.721 kb on + strand, within GFF3139 at 147.785 kb on + strand, within GFF3139 at 147.925 kb on + strand at 147.928 kb on + strand at 147.928 kb on + strand at 147.929 kb on - strand at 147.929 kb on - strand at 147.929 kb on - strand at 148.186 kb on + strand, within GFF3141 at 148.288 kb on - strand, within GFF3141 at 148.325 kb on - strand, within GFF3141 at 148.401 kb on + strand, within GFF3141 at 148.470 kb on - strand, within GFF3141 at 148.476 kb on - strand, within GFF3141 at 148.584 kb on + strand at 148.653 kb on + strand at 148.654 kb on - strand at 148.754 kb on - strand, within GFF3142 at 148.898 kb on - strand, within GFF3142
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 145,626 - GFF3137 0.60 -0.1 145,736 + GFF3137 0.88 +1.1 145,786 - -0.9 145,819 - +0.2 145,819 - -0.1 145,821 + +0.0 145,821 + -0.1 145,872 + -0.4 145,872 + +0.7 145,896 - +0.1 145,949 + +0.9 145,966 - +0.4 145,996 - -0.5 146,065 + GFF3138 0.20 +0.2 146,066 - GFF3138 0.20 -1.2 146,076 + GFF3138 0.22 +0.4 146,204 + GFF3138 0.41 -0.3 146,205 - GFF3138 0.41 +0.2 146,228 + GFF3138 0.45 -0.7 146,229 - GFF3138 0.45 +0.4 146,381 + GFF3138 0.68 +0.4 146,414 + GFF3138 0.73 -0.5 146,414 + GFF3138 0.73 +0.3 146,452 - GFF3138 0.79 +0.2 146,468 - GFF3138 0.81 +0.3 146,468 - GFF3138 0.81 +0.9 146,690 - -2.8 146,802 - GFF3139 0.16 -0.5 146,828 + GFF3139 0.18 +0.1 146,828 + GFF3139 0.18 -1.2 146,950 - GFF3139 0.27 -0.8 147,010 - GFF3139 0.31 -1.3 147,014 + GFF3139 0.31 -1.3 147,115 + GFF3139 0.39 -0.9 147,223 + GFF3139 0.47 +0.5 147,497 + GFF3139 0.67 -1.4 147,557 + GFF3139 0.72 -1.1 147,605 + GFF3139 0.75 -0.5 147,622 + GFF3139 0.77 -1.0 147,623 - GFF3139 0.77 -0.5 147,721 + GFF3139 0.84 -3.3 147,721 + GFF3139 0.84 +0.4 147,785 + GFF3139 0.89 -1.3 147,925 + -0.4 147,928 + +0.3 147,928 + -0.5 147,929 - -0.3 147,929 - -0.4 147,929 - -0.2 148,186 + GFF3141 0.24 +0.0 148,288 - GFF3141 0.42 -0.1 148,325 - GFF3141 0.48 -0.0 148,401 + GFF3141 0.61 +0.2 148,470 - GFF3141 0.73 +0.2 148,476 - GFF3141 0.74 +0.5 148,584 + -0.8 148,653 + -0.2 148,654 - -0.2 148,754 - GFF3142 0.30 +0.8 148,898 - GFF3142 0.76 +0.1
Or see this region's nucleotide sequence