Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3079

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
88,175	-		GFF3078	0.55	-0.0
88,202	-		GFF3078	0.57	-0.2
88,421	-		GFF3078	0.75	-0.3
88,424	-		GFF3078	0.76	-0.7
88,814	-				-0.2
88,818	-				-0.2
88,865	-				+0.2
88,869	-				+0.2
89,111	+				-0.4
89,124	+				-1.5
89,180	-				+0.6
89,278	-		GFF3079	0.16	-0.7
89,480	-		GFF3079	0.43	-0.8
89,515	+		GFF3079	0.47	+0.1
89,524	+		GFF3079	0.48	+0.2
89,573	-		GFF3079	0.55	+0.7
89,573	-		GFF3079	0.55	+0.1
89,605	-		GFF3079	0.59	+1.5
89,643	+		GFF3079	0.64	+0.2
89,902	+				-0.4
89,903	-				-0.1
89,958	+				+0.3
89,960	+				+0.5
90,065	+				+0.4
90,078	-		GFF3080	0.12	+0.4
90,137	+		GFF3080	0.22	-0.0
90,145	-		GFF3080	0.24	-0.1
90,162	+		GFF3080	0.27	-0.1
90,243	+		GFF3080	0.41	-0.9
90,266	-		GFF3080	0.46	-0.8
90,674	-				+0.3
90,728	-		GFF3081	0.12	+0.7
90,729	+		GFF3081	0.12	+0.1
90,729	+		GFF3081	0.12	-0.0
90,730	-		GFF3081	0.12	+0.7
90,730	-		GFF3081	0.12	+0.1
90,733	+		GFF3081	0.12	+0.1
90,733	+		GFF3081	0.12	-0.1
90,734	-		GFF3081	0.12	-0.2
90,768	+		GFF3081	0.15	-0.1
90,771	+		GFF3081	0.15	-0.1
90,784	-		GFF3081	0.16	+0.1
90,861	+		GFF3081	0.21	-0.1
90,865	+		GFF3081	0.21	+0.3
90,866	-		GFF3081	0.21	+0.7
90,866	-		GFF3081	0.21	-0.3
90,897	-		GFF3081	0.23	-0.3
90,901	+		GFF3081	0.24	-0.7
90,902	-		GFF3081	0.24	-0.5