Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2989 and GFF2990 are separated by 5 nucleotides GFF2990 and GFF2991 are separated by 23 nucleotides GFF2991 and GFF2992 are separated by 112 nucleotides GFF2992 and GFF2993 are separated by 52 nucleotides
GFF2989 - Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-), at 7,083 to 8,816
GFF2989
GFF2990 - Thiol:disulfide interchange protein DsbC, at 8,822 to 9,535
GFF2990
GFF2991 - Tyrosine recombinase XerD, at 9,559 to 10,455
GFF2991
GFF2992 - Flavodoxin 2, at 10,568 to 11,089
GFF2992
GFF2993 - FIG00731769: possible membrane protein, at 11,142 to 11,555
GFF2993
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 8.730 kb on + strand at 8.742 kb on + strand at 8.742 kb on + strand at 8.742 kb on + strand at 8.824 kb on - strand at 8.824 kb on - strand at 8.824 kb on - strand at 8.901 kb on + strand, within GFF2990 at 8.902 kb on - strand, within GFF2990 at 8.916 kb on - strand, within GFF2990 at 8.961 kb on + strand, within GFF2990 at 9.007 kb on + strand, within GFF2990 at 9.058 kb on + strand, within GFF2990 at 9.068 kb on - strand, within GFF2990 at 9.114 kb on + strand, within GFF2990 at 9.139 kb on + strand, within GFF2990 at 9.161 kb on + strand, within GFF2990 at 9.161 kb on + strand, within GFF2990 at 9.162 kb on - strand, within GFF2990 at 9.162 kb on - strand, within GFF2990 at 9.231 kb on + strand, within GFF2990 at 9.337 kb on + strand, within GFF2990 at 9.337 kb on + strand, within GFF2990 at 9.338 kb on - strand, within GFF2990 at 9.361 kb on - strand, within GFF2990 at 9.718 kb on + strand, within GFF2991 at 9.719 kb on - strand, within GFF2991 at 9.719 kb on - strand, within GFF2991 at 9.767 kb on + strand, within GFF2991 at 9.856 kb on + strand, within GFF2991 at 10.028 kb on + strand, within GFF2991 at 10.044 kb on + strand, within GFF2991 at 10.045 kb on - strand, within GFF2991 at 10.491 kb on + strand at 10.492 kb on - strand at 10.492 kb on - strand at 10.492 kb on - strand at 10.492 kb on - strand at 10.543 kb on + strand at 10.561 kb on + strand at 10.562 kb on - strand at 10.562 kb on - strand at 10.567 kb on - strand at 10.567 kb on - strand at 10.604 kb on + strand at 10.604 kb on + strand at 10.662 kb on + strand, within GFF2992 at 10.662 kb on + strand, within GFF2992 at 10.662 kb on + strand, within GFF2992 at 10.663 kb on - strand, within GFF2992 at 10.663 kb on - strand, within GFF2992 at 10.663 kb on - strand, within GFF2992 at 10.663 kb on - strand, within GFF2992 at 10.703 kb on + strand, within GFF2992 at 10.873 kb on + strand, within GFF2992 at 10.907 kb on - strand, within GFF2992 at 10.954 kb on + strand, within GFF2992 at 11.035 kb on + strand, within GFF2992 at 11.036 kb on - strand, within GFF2992 at 11.105 kb on - strand at 11.170 kb on - strand at 11.287 kb on - strand, within GFF2993 at 11.375 kb on + strand, within GFF2993 at 11.375 kb on + strand, within GFF2993 at 11.376 kb on - strand, within GFF2993 at 11.390 kb on + strand, within GFF2993 at 11.422 kb on - strand, within GFF2993 at 11.422 kb on - strand, within GFF2993 at 11.422 kb on - strand, within GFF2993 at 11.424 kb on + strand, within GFF2993 at 11.424 kb on + strand, within GFF2993 at 11.425 kb on - strand, within GFF2993 at 11.444 kb on - strand, within GFF2993
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 8,730 + -0.2 8,742 + +0.1 8,742 + -0.5 8,742 + -0.7 8,824 - -0.3 8,824 - -0.3 8,824 - +0.3 8,901 + GFF2990 0.11 -1.0 8,902 - GFF2990 0.11 +0.4 8,916 - GFF2990 0.13 +0.1 8,961 + GFF2990 0.19 +1.3 9,007 + GFF2990 0.26 +0.1 9,058 + GFF2990 0.33 +1.1 9,068 - GFF2990 0.34 -0.2 9,114 + GFF2990 0.41 -0.1 9,139 + GFF2990 0.44 +0.7 9,161 + GFF2990 0.47 +0.3 9,161 + GFF2990 0.47 -0.1 9,162 - GFF2990 0.48 +0.7 9,162 - GFF2990 0.48 -0.4 9,231 + GFF2990 0.57 -0.4 9,337 + GFF2990 0.72 -0.1 9,337 + GFF2990 0.72 -0.5 9,338 - GFF2990 0.72 -0.1 9,361 - GFF2990 0.75 -0.1 9,718 + GFF2991 0.18 -2.6 9,719 - GFF2991 0.18 -3.3 9,719 - GFF2991 0.18 -2.4 9,767 + GFF2991 0.23 -2.5 9,856 + GFF2991 0.33 -0.7 10,028 + GFF2991 0.52 -0.7 10,044 + GFF2991 0.54 -2.0 10,045 - GFF2991 0.54 -2.7 10,491 + +0.0 10,492 - -0.1 10,492 - -0.3 10,492 - -2.0 10,492 - +0.1 10,543 + -0.1 10,561 + +0.4 10,562 - -1.1 10,562 - -0.8 10,567 - -0.3 10,567 - -0.4 10,604 + +0.1 10,604 + -1.7 10,662 + GFF2992 0.18 -1.0 10,662 + GFF2992 0.18 -0.3 10,662 + GFF2992 0.18 -0.5 10,663 - GFF2992 0.18 -0.5 10,663 - GFF2992 0.18 -0.7 10,663 - GFF2992 0.18 -0.9 10,663 - GFF2992 0.18 -0.9 10,703 + GFF2992 0.26 +0.1 10,873 + GFF2992 0.58 -0.0 10,907 - GFF2992 0.65 -1.3 10,954 + GFF2992 0.74 +0.3 11,035 + GFF2992 0.89 -0.2 11,036 - GFF2992 0.90 -1.7 11,105 - -2.1 11,170 - +0.3 11,287 - GFF2993 0.35 +0.0 11,375 + GFF2993 0.56 +1.1 11,375 + GFF2993 0.56 +0.4 11,376 - GFF2993 0.57 +0.2 11,390 + GFF2993 0.60 +0.6 11,422 - GFF2993 0.68 -0.3 11,422 - GFF2993 0.68 +1.0 11,422 - GFF2993 0.68 +0.3 11,424 + GFF2993 0.68 +0.4 11,424 + GFF2993 0.68 -0.4 11,425 - GFF2993 0.68 +0.4 11,444 - GFF2993 0.73 +0.1
Or see this region's nucleotide sequence