Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2991

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
8,730	+				-0.2
8,742	+				+0.1
8,742	+				-0.5
8,742	+				-0.7
8,824	-				-0.3
8,824	-				-0.3
8,824	-				+0.3
8,901	+		GFF2990	0.11	-1.0
8,902	-		GFF2990	0.11	+0.4
8,916	-		GFF2990	0.13	+0.1
8,961	+		GFF2990	0.19	+1.3
9,007	+		GFF2990	0.26	+0.1
9,058	+		GFF2990	0.33	+1.1
9,068	-		GFF2990	0.34	-0.2
9,114	+		GFF2990	0.41	-0.1
9,139	+		GFF2990	0.44	+0.7
9,161	+		GFF2990	0.47	+0.3
9,161	+		GFF2990	0.47	-0.1
9,162	-		GFF2990	0.48	+0.7
9,162	-		GFF2990	0.48	-0.4
9,231	+		GFF2990	0.57	-0.4
9,337	+		GFF2990	0.72	-0.1
9,337	+		GFF2990	0.72	-0.5
9,338	-		GFF2990	0.72	-0.1
9,361	-		GFF2990	0.75	-0.1
9,718	+		GFF2991	0.18	-2.6
9,719	-		GFF2991	0.18	-3.3
9,719	-		GFF2991	0.18	-2.4
9,767	+		GFF2991	0.23	-2.5
9,856	+		GFF2991	0.33	-0.7
10,028	+		GFF2991	0.52	-0.7
10,044	+		GFF2991	0.54	-2.0
10,045	-		GFF2991	0.54	-2.7
10,491	+				+0.0
10,492	-				-0.1
10,492	-				-0.3
10,492	-				-2.0
10,492	-				+0.1
10,543	+				-0.1
10,561	+				+0.4
10,562	-				-1.1
10,562	-				-0.8
10,567	-				-0.3
10,567	-				-0.4
10,604	+				+0.1
10,604	+				-1.7
10,662	+		GFF2992	0.18	-1.0
10,662	+		GFF2992	0.18	-0.3
10,662	+		GFF2992	0.18	-0.5
10,663	-		GFF2992	0.18	-0.5
10,663	-		GFF2992	0.18	-0.7
10,663	-		GFF2992	0.18	-0.9
10,663	-		GFF2992	0.18	-0.9
10,703	+		GFF2992	0.26	+0.1
10,873	+		GFF2992	0.58	-0.0
10,907	-		GFF2992	0.65	-1.3
10,954	+		GFF2992	0.74	+0.3
11,035	+		GFF2992	0.89	-0.2
11,036	-		GFF2992	0.90	-1.7
11,105	-				-2.1
11,170	-				+0.3
11,287	-		GFF2993	0.35	+0.0
11,375	+		GFF2993	0.56	+1.1
11,375	+		GFF2993	0.56	+0.4
11,376	-		GFF2993	0.57	+0.2
11,390	+		GFF2993	0.60	+0.6
11,422	-		GFF2993	0.68	-0.3
11,422	-		GFF2993	0.68	+1.0
11,422	-		GFF2993	0.68	+0.3
11,424	+		GFF2993	0.68	+0.4
11,424	+		GFF2993	0.68	-0.4
11,425	-		GFF2993	0.68	+0.4
11,444	-		GFF2993	0.73	+0.1