Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2991

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2989 and GFF2990 are separated by 5 nucleotidesGFF2990 and GFF2991 are separated by 23 nucleotidesGFF2991 and GFF2992 are separated by 112 nucleotidesGFF2992 and GFF2993 are separated by 52 nucleotides GFF2989 - Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-), at 7,083 to 8,816 GFF2989 GFF2990 - Thiol:disulfide interchange protein DsbC, at 8,822 to 9,535 GFF2990 GFF2991 - Tyrosine recombinase XerD, at 9,559 to 10,455 GFF2991 GFF2992 - Flavodoxin 2, at 10,568 to 11,089 GFF2992 GFF2993 - FIG00731769: possible membrane protein, at 11,142 to 11,555 GFF2993 Position (kb) 9 10 11Strain fitness (log2 ratio) -3 -2 -1 0 1at 8.730 kb on + strandat 8.742 kb on + strandat 8.742 kb on + strandat 8.742 kb on + strandat 8.824 kb on - strandat 8.824 kb on - strandat 8.824 kb on - strandat 8.901 kb on + strand, within GFF2990at 8.902 kb on - strand, within GFF2990at 8.916 kb on - strand, within GFF2990at 8.961 kb on + strand, within GFF2990at 9.007 kb on + strand, within GFF2990at 9.058 kb on + strand, within GFF2990at 9.068 kb on - strand, within GFF2990at 9.114 kb on + strand, within GFF2990at 9.139 kb on + strand, within GFF2990at 9.161 kb on + strand, within GFF2990at 9.161 kb on + strand, within GFF2990at 9.162 kb on - strand, within GFF2990at 9.162 kb on - strand, within GFF2990at 9.231 kb on + strand, within GFF2990at 9.337 kb on + strand, within GFF2990at 9.337 kb on + strand, within GFF2990at 9.338 kb on - strand, within GFF2990at 9.361 kb on - strand, within GFF2990at 9.718 kb on + strand, within GFF2991at 9.719 kb on - strand, within GFF2991at 9.719 kb on - strand, within GFF2991at 9.767 kb on + strand, within GFF2991at 9.856 kb on + strand, within GFF2991at 10.028 kb on + strand, within GFF2991at 10.044 kb on + strand, within GFF2991at 10.045 kb on - strand, within GFF2991at 10.491 kb on + strandat 10.492 kb on - strandat 10.492 kb on - strandat 10.492 kb on - strandat 10.492 kb on - strandat 10.543 kb on + strandat 10.561 kb on + strandat 10.562 kb on - strandat 10.562 kb on - strandat 10.567 kb on - strandat 10.567 kb on - strandat 10.604 kb on + strandat 10.604 kb on + strandat 10.662 kb on + strand, within GFF2992at 10.662 kb on + strand, within GFF2992at 10.662 kb on + strand, within GFF2992at 10.663 kb on - strand, within GFF2992at 10.663 kb on - strand, within GFF2992at 10.663 kb on - strand, within GFF2992at 10.663 kb on - strand, within GFF2992at 10.703 kb on + strand, within GFF2992at 10.873 kb on + strand, within GFF2992at 10.907 kb on - strand, within GFF2992at 10.954 kb on + strand, within GFF2992at 11.035 kb on + strand, within GFF2992at 11.036 kb on - strand, within GFF2992at 11.105 kb on - strandat 11.170 kb on - strandat 11.287 kb on - strand, within GFF2993at 11.375 kb on + strand, within GFF2993at 11.375 kb on + strand, within GFF2993at 11.376 kb on - strand, within GFF2993at 11.390 kb on + strand, within GFF2993at 11.422 kb on - strand, within GFF2993at 11.422 kb on - strand, within GFF2993at 11.422 kb on - strand, within GFF2993at 11.424 kb on + strand, within GFF2993at 11.424 kb on + strand, within GFF2993at 11.425 kb on - strand, within GFF2993at 11.444 kb on - strand, within GFF2993

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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8,730 + -0.2
8,742 + +0.1
8,742 + -0.5
8,742 + -0.7
8,824 - -0.3
8,824 - -0.3
8,824 - +0.3
8,901 + GFF2990 0.11 -1.0
8,902 - GFF2990 0.11 +0.4
8,916 - GFF2990 0.13 +0.1
8,961 + GFF2990 0.19 +1.3
9,007 + GFF2990 0.26 +0.1
9,058 + GFF2990 0.33 +1.1
9,068 - GFF2990 0.34 -0.2
9,114 + GFF2990 0.41 -0.1
9,139 + GFF2990 0.44 +0.7
9,161 + GFF2990 0.47 +0.3
9,161 + GFF2990 0.47 -0.1
9,162 - GFF2990 0.48 +0.7
9,162 - GFF2990 0.48 -0.4
9,231 + GFF2990 0.57 -0.4
9,337 + GFF2990 0.72 -0.1
9,337 + GFF2990 0.72 -0.5
9,338 - GFF2990 0.72 -0.1
9,361 - GFF2990 0.75 -0.1
9,718 + GFF2991 0.18 -2.6
9,719 - GFF2991 0.18 -3.3
9,719 - GFF2991 0.18 -2.4
9,767 + GFF2991 0.23 -2.5
9,856 + GFF2991 0.33 -0.7
10,028 + GFF2991 0.52 -0.7
10,044 + GFF2991 0.54 -2.0
10,045 - GFF2991 0.54 -2.7
10,491 + +0.0
10,492 - -0.1
10,492 - -0.3
10,492 - -2.0
10,492 - +0.1
10,543 + -0.1
10,561 + +0.4
10,562 - -1.1
10,562 - -0.8
10,567 - -0.3
10,567 - -0.4
10,604 + +0.1
10,604 + -1.7
10,662 + GFF2992 0.18 -1.0
10,662 + GFF2992 0.18 -0.3
10,662 + GFF2992 0.18 -0.5
10,663 - GFF2992 0.18 -0.5
10,663 - GFF2992 0.18 -0.7
10,663 - GFF2992 0.18 -0.9
10,663 - GFF2992 0.18 -0.9
10,703 + GFF2992 0.26 +0.1
10,873 + GFF2992 0.58 -0.0
10,907 - GFF2992 0.65 -1.3
10,954 + GFF2992 0.74 +0.3
11,035 + GFF2992 0.89 -0.2
11,036 - GFF2992 0.90 -1.7
11,105 - -2.1
11,170 - +0.3
11,287 - GFF2993 0.35 +0.0
11,375 + GFF2993 0.56 +1.1
11,375 + GFF2993 0.56 +0.4
11,376 - GFF2993 0.57 +0.2
11,390 + GFF2993 0.60 +0.6
11,422 - GFF2993 0.68 -0.3
11,422 - GFF2993 0.68 +1.0
11,422 - GFF2993 0.68 +0.3
11,424 + GFF2993 0.68 +0.4
11,424 + GFF2993 0.68 -0.4
11,425 - GFF2993 0.68 +0.4
11,444 - GFF2993 0.73 +0.1

Or see this region's nucleotide sequence