Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2887

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
9,954	+		GFF2886	0.35	-0.9
10,226	-		GFF2886	0.57	+0.1
10,485	-		GFF2886	0.77	-0.4
10,485	-		GFF2886	0.77	-0.5
10,674	+				+0.2
10,749	+				-0.2
10,835	-				-0.4
10,892	+		GFF2887	0.11	+0.2
10,893	-		GFF2887	0.11	+0.4
10,936	-		GFF2887	0.15	-3.0
10,940	+		GFF2887	0.16	-0.8
10,997	+		GFF2887	0.21	-0.7
10,998	-		GFF2887	0.21	+0.5
11,083	+		GFF2887	0.29	-0.1
11,103	+		GFF2887	0.31	-0.6
11,288	+		GFF2887	0.48	-0.8
11,332	-		GFF2887	0.52	-0.7
11,336	+		GFF2887	0.52	-0.8
11,336	+		GFF2887	0.52	-1.0
11,336	+		GFF2887	0.52	+0.3
11,337	-		GFF2887	0.52	-0.5
11,525	-		GFF2887	0.70	-0.0
11,553	+		GFF2887	0.72	-0.0
11,578	+		GFF2887	0.74	+2.5
11,606	+		GFF2887	0.77	-1.1
11,721	-		GFF2887	0.88	+0.0
11,734	+		GFF2887	0.89	-0.6
11,760	+				+0.4
11,876	+				-0.2
11,883	+				-1.1
11,884	-				-0.6
11,924	+				-0.5
12,076	-		GFF2888	0.11	+0.4
12,132	+		GFF2888	0.17	-2.0
12,132	+		GFF2888	0.17	-0.9
12,132	+		GFF2888	0.17	-0.7
12,216	+		GFF2888	0.25	-0.1
12,230	-		GFF2888	0.26	+0.2
12,230	-		GFF2888	0.26	+0.2
12,288	+		GFF2888	0.32	-0.1
12,288	+		GFF2888	0.32	+0.6
12,291	+		GFF2888	0.32	-0.4
12,325	-		GFF2888	0.35	+0.0
12,470	+		GFF2888	0.49	+0.5
12,470	+		GFF2888	0.49	+0.2
12,566	-		GFF2888	0.58	+0.1
12,566	-		GFF2888	0.58	+0.3
12,633	-		GFF2888	0.65	+0.2
12,636	-		GFF2888	0.65	+1.2
12,636	-		GFF2888	0.65	-0.0
12,701	+		GFF2888	0.71	+0.8
12,701	+		GFF2888	0.71	-1.5
12,751	-		GFF2888	0.76	+0.2
12,751	-		GFF2888	0.76	+0.2
12,754	-		GFF2888	0.76	+0.4
12,786	-		GFF2888	0.79	+0.2
12,801	+		GFF2888	0.81	+0.4
12,801	+		GFF2888	0.81	+0.1
12,802	-		GFF2888	0.81	+0.6
12,802	-		GFF2888	0.81	+0.3
12,802	-		GFF2888	0.81	+0.1
12,805	+		GFF2888	0.81	+0.3
12,806	-		GFF2888	0.81	+0.3