Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2886

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
8,615	+		GFF2885	0.16	-0.0
8,615	+		GFF2885	0.16	-1.8
8,616	-		GFF2885	0.16	+0.2
8,616	-		GFF2885	0.16	-0.0
8,616	-		GFF2885	0.16	-0.7
8,616	-		GFF2885	0.16	-0.2
8,616	-		GFF2885	0.16	+0.6
8,616	-		GFF2885	0.16	-0.3
8,648	-		GFF2885	0.19	+0.0
8,766	+		GFF2885	0.30	+1.0
8,766	+		GFF2885	0.30	+1.8
8,766	+		GFF2885	0.30	+0.1
8,766	+		GFF2885	0.30	+0.4
8,766	+		GFF2885	0.30	+0.2
8,767	-		GFF2885	0.30	+1.4
8,767	-		GFF2885	0.30	+1.3
8,767	-		GFF2885	0.30	+0.6
8,802	+		GFF2885	0.34	-0.3
8,803	-		GFF2885	0.34	+0.5
8,862	+		GFF2885	0.39	-0.2
8,931	+		GFF2885	0.46	+0.8
8,945	-		GFF2885	0.47	+0.3
8,945	-		GFF2885	0.47	+0.1
8,945	-		GFF2885	0.47	+0.2
8,947	+		GFF2885	0.47	-1.3
8,947	+		GFF2885	0.47	+0.5
8,948	-		GFF2885	0.47	+0.7
8,969	-		GFF2885	0.49	+0.0
8,979	+		GFF2885	0.50	-0.2
8,984	-		GFF2885	0.51	+0.2
9,052	-		GFF2885	0.57	+0.3
9,118	+		GFF2885	0.63	+0.2
9,118	+		GFF2885	0.63	-0.7
9,195	+		GFF2885	0.70	-0.8
9,195	+		GFF2885	0.70	-0.7
9,195	+		GFF2885	0.70	+0.6
9,195	+		GFF2885	0.70	-1.4
9,196	-		GFF2885	0.70	-2.0
9,251	+		GFF2885	0.76	-0.2
9,252	-		GFF2885	0.76	+0.1
9,729	+		GFF2886	0.17	-1.3
9,954	+		GFF2886	0.35	-0.9
10,226	-		GFF2886	0.57	+0.1
10,485	-		GFF2886	0.77	-0.4
10,485	-		GFF2886	0.77	-0.5
10,674	+				+0.2
10,749	+				-0.2
10,835	-				-0.4
10,892	+		GFF2887	0.11	+0.2
10,893	-		GFF2887	0.11	+0.4
10,936	-		GFF2887	0.15	-3.0
10,940	+		GFF2887	0.16	-0.8
10,997	+		GFF2887	0.21	-0.7
10,998	-		GFF2887	0.21	+0.5
11,083	+		GFF2887	0.29	-0.1
11,103	+		GFF2887	0.31	-0.6
11,288	+		GFF2887	0.48	-0.8
11,332	-		GFF2887	0.52	-0.7
11,336	+		GFF2887	0.52	-0.8
11,336	+		GFF2887	0.52	-1.0
11,336	+		GFF2887	0.52	+0.3
11,337	-		GFF2887	0.52	-0.5
11,525	-		GFF2887	0.70	-0.0
11,553	+		GFF2887	0.72	-0.0
11,578	+		GFF2887	0.74	+2.5
11,606	+		GFF2887	0.77	-1.1
11,721	-		GFF2887	0.88	+0.0
11,734	+		GFF2887	0.89	-0.6
11,760	+				+0.4