Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2881 and GFF2882 are separated by 1 nucleotides GFF2882 and GFF2883 are separated by 4 nucleotides GFF2883 and GFF2884 overlap by 23 nucleotides GFF2884 and GFF2885 are separated by 32 nucleotides
GFF2881 - WzxE protein, at 5,145 to 6,395
GFF2881
GFF2882 - Lipopolysaccharide biosynthesis protein RffA, at 6,397 to 7,527
GFF2882
GFF2883 - Lipopolysaccharide biosynthesis protein RffC, at 7,532 to 8,209
GFF2883
GFF2884 - Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24), at 8,187 to 8,411
GFF2884
GFF2885 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 8,444 to 9,511
GFF2885
Position (kb) 6
7
8 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 5.605 kb on + strand, within GFF2881 at 5.605 kb on + strand, within GFF2881 at 5.618 kb on + strand, within GFF2881 at 5.625 kb on + strand, within GFF2881 at 5.657 kb on + strand, within GFF2881 at 5.658 kb on - strand, within GFF2881 at 5.658 kb on - strand, within GFF2881 at 5.659 kb on + strand, within GFF2881 at 5.692 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.817 kb on + strand, within GFF2881 at 5.818 kb on - strand, within GFF2881 at 5.818 kb on - strand, within GFF2881 at 5.820 kb on + strand, within GFF2881 at 5.822 kb on + strand, within GFF2881 at 5.836 kb on - strand, within GFF2881 at 5.946 kb on + strand, within GFF2881 at 6.052 kb on + strand, within GFF2881 at 6.080 kb on + strand, within GFF2881 at 6.122 kb on + strand, within GFF2881 at 6.123 kb on - strand, within GFF2881 at 6.135 kb on + strand, within GFF2881 at 6.168 kb on + strand, within GFF2881 at 6.169 kb on - strand, within GFF2881 at 6.182 kb on + strand, within GFF2881 at 6.223 kb on - strand, within GFF2881 at 6.395 kb on + strand at 6.421 kb on - strand at 6.458 kb on + strand at 6.459 kb on - strand at 6.504 kb on - strand at 6.567 kb on - strand, within GFF2882 at 6.607 kb on - strand, within GFF2882 at 6.654 kb on + strand, within GFF2882 at 6.655 kb on - strand, within GFF2882 at 6.772 kb on - strand, within GFF2882 at 6.857 kb on + strand, within GFF2882 at 6.858 kb on - strand, within GFF2882 at 6.861 kb on + strand, within GFF2882 at 6.936 kb on + strand, within GFF2882 at 7.002 kb on + strand, within GFF2882 at 7.002 kb on + strand, within GFF2882 at 7.047 kb on - strand, within GFF2882 at 7.092 kb on + strand, within GFF2882 at 7.093 kb on - strand, within GFF2882 at 7.094 kb on + strand, within GFF2882 at 7.094 kb on + strand, within GFF2882 at 7.150 kb on + strand, within GFF2882 at 7.150 kb on + strand, within GFF2882 at 7.162 kb on - strand, within GFF2882 at 7.209 kb on + strand, within GFF2882 at 7.209 kb on + strand, within GFF2882 at 7.290 kb on + strand, within GFF2882 at 7.481 kb on + strand at 7.481 kb on + strand at 7.481 kb on + strand at 7.539 kb on + strand at 7.540 kb on - strand at 7.580 kb on + strand at 7.581 kb on - strand at 7.584 kb on + strand at 7.980 kb on - strand, within GFF2883 at 8.168 kb on - strand at 8.180 kb on + strand at 8.237 kb on - strand, within GFF2884 at 8.350 kb on - strand, within GFF2884 at 8.350 kb on - strand, within GFF2884 at 8.360 kb on + strand, within GFF2884 at 8.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 5,605 + GFF2881 0.37 -4.3 5,605 + GFF2881 0.37 -4.9 5,618 + GFF2881 0.38 -3.1 5,625 + GFF2881 0.38 -5.4 5,657 + GFF2881 0.41 -3.8 5,658 - GFF2881 0.41 -4.3 5,658 - GFF2881 0.41 -4.7 5,659 + GFF2881 0.41 -5.7 5,692 + GFF2881 0.44 -5.0 5,817 + GFF2881 0.54 -3.4 5,817 + GFF2881 0.54 -4.0 5,817 + GFF2881 0.54 -4.6 5,818 - GFF2881 0.54 -1.2 5,818 - GFF2881 0.54 -2.0 5,820 + GFF2881 0.54 -2.3 5,822 + GFF2881 0.54 -5.2 5,836 - GFF2881 0.55 -6.1 5,946 + GFF2881 0.64 -3.3 6,052 + GFF2881 0.73 -2.8 6,080 + GFF2881 0.75 -4.2 6,122 + GFF2881 0.78 -5.1 6,123 - GFF2881 0.78 -3.3 6,135 + GFF2881 0.79 -2.5 6,168 + GFF2881 0.82 -4.0 6,169 - GFF2881 0.82 -1.9 6,182 + GFF2881 0.83 -5.4 6,223 - GFF2881 0.86 -2.3 6,395 + -5.0 6,421 - -3.9 6,458 + -2.8 6,459 - -2.0 6,504 - -0.8 6,567 - GFF2882 0.15 -3.9 6,607 - GFF2882 0.19 -2.8 6,654 + GFF2882 0.23 -3.6 6,655 - GFF2882 0.23 -4.8 6,772 - GFF2882 0.33 -1.8 6,857 + GFF2882 0.41 -2.6 6,858 - GFF2882 0.41 -2.9 6,861 + GFF2882 0.41 -4.3 6,936 + GFF2882 0.48 -3.7 7,002 + GFF2882 0.53 -4.6 7,002 + GFF2882 0.53 -3.0 7,047 - GFF2882 0.57 -3.2 7,092 + GFF2882 0.61 -4.4 7,093 - GFF2882 0.62 -4.0 7,094 + GFF2882 0.62 -1.6 7,094 + GFF2882 0.62 +0.2 7,150 + GFF2882 0.67 -5.1 7,150 + GFF2882 0.67 -2.6 7,162 - GFF2882 0.68 -4.5 7,209 + GFF2882 0.72 -4.1 7,209 + GFF2882 0.72 -4.8 7,290 + GFF2882 0.79 -0.0 7,481 + -4.3 7,481 + -0.2 7,481 + -3.3 7,539 + -3.1 7,540 - -5.5 7,580 + -3.3 7,581 - -5.1 7,584 + -5.1 7,980 - GFF2883 0.66 -2.6 8,168 - -4.5 8,180 + -3.4 8,237 - GFF2884 0.22 +0.4 8,350 - GFF2884 0.72 +0.3 8,350 - GFF2884 0.72 -0.3 8,360 + GFF2884 0.77 -0.9 8,431 - +0.8
Or see this region's nucleotide sequence