Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2881
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
4,156 | + | -1.6 | |||
4,200 | + | GFF2880 | 0.12 | -2.1 | |
4,276 | + | GFF2880 | 0.19 | -2.7 | |
4,464 | + | GFF2880 | 0.37 | -2.9 | |
4,466 | + | GFF2880 | 0.37 | -4.4 | |
4,466 | + | GFF2880 | 0.37 | -3.9 | |
4,466 | + | GFF2880 | 0.37 | -4.3 | |
4,466 | + | GFF2880 | 0.37 | -4.1 | |
4,466 | + | GFF2880 | 0.37 | -3.8 | |
4,466 | + | GFF2880 | 0.37 | -3.0 | |
4,533 | - | GFF2880 | 0.43 | -4.8 | |
4,827 | + | GFF2880 | 0.70 | -4.9 | |
4,969 | - | GFF2880 | 0.83 | -4.7 | |
5,103 | + | -4.1 | |||
5,201 | + | -4.5 | |||
5,202 | - | -4.7 | |||
5,203 | + | -1.4 | |||
5,203 | + | -5.3 | |||
5,213 | + | -4.3 | |||
5,215 | + | -5.2 | |||
5,215 | + | -0.9 | |||
5,215 | + | -4.7 | |||
5,215 | + | -2.9 | |||
5,216 | - | -4.8 | |||
5,382 | + | GFF2881 | 0.19 | -4.3 | |
5,605 | + | GFF2881 | 0.37 | -4.3 | |
5,605 | + | GFF2881 | 0.37 | -4.9 | |
5,618 | + | GFF2881 | 0.38 | -3.1 | |
5,625 | + | GFF2881 | 0.38 | -5.4 | |
5,657 | + | GFF2881 | 0.41 | -3.8 | |
5,658 | - | GFF2881 | 0.41 | -4.3 | |
5,658 | - | GFF2881 | 0.41 | -4.7 | |
5,659 | + | GFF2881 | 0.41 | -5.7 | |
5,692 | + | GFF2881 | 0.44 | -5.0 | |
5,817 | + | GFF2881 | 0.54 | -3.4 | |
5,817 | + | GFF2881 | 0.54 | -4.0 | |
5,817 | + | GFF2881 | 0.54 | -4.6 | |
5,818 | - | GFF2881 | 0.54 | -1.2 | |
5,818 | - | GFF2881 | 0.54 | -2.0 | |
5,820 | + | GFF2881 | 0.54 | -2.3 | |
5,822 | + | GFF2881 | 0.54 | -5.2 | |
5,836 | - | GFF2881 | 0.55 | -6.1 | |
5,946 | + | GFF2881 | 0.64 | -3.3 | |
6,052 | + | GFF2881 | 0.73 | -2.8 | |
6,080 | + | GFF2881 | 0.75 | -4.2 | |
6,122 | + | GFF2881 | 0.78 | -5.1 | |
6,123 | - | GFF2881 | 0.78 | -3.3 | |
6,135 | + | GFF2881 | 0.79 | -2.5 | |
6,168 | + | GFF2881 | 0.82 | -4.0 | |
6,169 | - | GFF2881 | 0.82 | -1.9 | |
6,182 | + | GFF2881 | 0.83 | -5.4 | |
6,223 | - | GFF2881 | 0.86 | -2.3 | |
6,395 | + | -5.0 | |||
6,421 | - | -3.9 | |||
6,458 | + | -2.8 | |||
6,459 | - | -2.0 | |||
6,504 | - | -0.8 | |||
6,567 | - | GFF2882 | 0.15 | -3.9 | |
6,607 | - | GFF2882 | 0.19 | -2.8 | |
6,654 | + | GFF2882 | 0.23 | -3.6 | |
6,655 | - | GFF2882 | 0.23 | -4.8 | |
6,772 | - | GFF2882 | 0.33 | -1.8 | |
6,857 | + | GFF2882 | 0.41 | -2.6 | |
6,858 | - | GFF2882 | 0.41 | -2.9 | |
6,861 | + | GFF2882 | 0.41 | -4.3 | |
6,936 | + | GFF2882 | 0.48 | -3.7 | |
7,002 | + | GFF2882 | 0.53 | -4.6 | |
7,002 | + | GFF2882 | 0.53 | -3.0 | |
7,047 | - | GFF2882 | 0.57 | -3.2 | |
7,092 | + | GFF2882 | 0.61 | -4.4 | |
7,093 | - | GFF2882 | 0.62 | -4.0 | |
7,094 | + | GFF2882 | 0.62 | -1.6 | |
7,094 | + | GFF2882 | 0.62 | +0.2 | |
7,150 | + | GFF2882 | 0.67 | -5.1 | |
7,150 | + | GFF2882 | 0.67 | -2.6 | |
7,162 | - | GFF2882 | 0.68 | -4.5 | |
7,209 | + | GFF2882 | 0.72 | -4.1 | |
7,209 | + | GFF2882 | 0.72 | -4.8 | |
7,290 | + | GFF2882 | 0.79 | -0.0 |
Or see this region's nucleotide sequence