Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2881

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2880 and GFF2881 overlap by 4 nucleotidesGFF2881 and GFF2882 are separated by 1 nucleotides GFF2880 - 4-alpha-L-fucosyltransferase (EC 2.4.1.-), at 4,069 to 5,148 GFF2880 GFF2881 - WzxE protein, at 5,145 to 6,395 GFF2881 GFF2882 - Lipopolysaccharide biosynthesis protein RffA, at 6,397 to 7,527 GFF2882 Position (kb) 5 6 7Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 4.156 kb on + strandat 4.200 kb on + strand, within GFF2880at 4.276 kb on + strand, within GFF2880at 4.464 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.466 kb on + strand, within GFF2880at 4.533 kb on - strand, within GFF2880at 4.827 kb on + strand, within GFF2880at 4.969 kb on - strand, within GFF2880at 5.103 kb on + strandat 5.201 kb on + strandat 5.202 kb on - strandat 5.203 kb on + strandat 5.203 kb on + strandat 5.213 kb on + strandat 5.215 kb on + strandat 5.215 kb on + strandat 5.215 kb on + strandat 5.215 kb on + strandat 5.216 kb on - strandat 5.382 kb on + strand, within GFF2881at 5.605 kb on + strand, within GFF2881at 5.605 kb on + strand, within GFF2881at 5.618 kb on + strand, within GFF2881at 5.625 kb on + strand, within GFF2881at 5.657 kb on + strand, within GFF2881at 5.658 kb on - strand, within GFF2881at 5.658 kb on - strand, within GFF2881at 5.659 kb on + strand, within GFF2881at 5.692 kb on + strand, within GFF2881at 5.817 kb on + strand, within GFF2881at 5.817 kb on + strand, within GFF2881at 5.817 kb on + strand, within GFF2881at 5.818 kb on - strand, within GFF2881at 5.818 kb on - strand, within GFF2881at 5.820 kb on + strand, within GFF2881at 5.822 kb on + strand, within GFF2881at 5.836 kb on - strand, within GFF2881at 5.946 kb on + strand, within GFF2881at 6.052 kb on + strand, within GFF2881at 6.080 kb on + strand, within GFF2881at 6.122 kb on + strand, within GFF2881at 6.123 kb on - strand, within GFF2881at 6.135 kb on + strand, within GFF2881at 6.168 kb on + strand, within GFF2881at 6.169 kb on - strand, within GFF2881at 6.182 kb on + strand, within GFF2881at 6.223 kb on - strand, within GFF2881at 6.395 kb on + strandat 6.421 kb on - strandat 6.458 kb on + strandat 6.459 kb on - strandat 6.504 kb on - strandat 6.567 kb on - strand, within GFF2882at 6.607 kb on - strand, within GFF2882at 6.654 kb on + strand, within GFF2882at 6.655 kb on - strand, within GFF2882at 6.772 kb on - strand, within GFF2882at 6.857 kb on + strand, within GFF2882at 6.858 kb on - strand, within GFF2882at 6.861 kb on + strand, within GFF2882at 6.936 kb on + strand, within GFF2882at 7.002 kb on + strand, within GFF2882at 7.002 kb on + strand, within GFF2882at 7.047 kb on - strand, within GFF2882at 7.092 kb on + strand, within GFF2882at 7.093 kb on - strand, within GFF2882at 7.094 kb on + strand, within GFF2882at 7.094 kb on + strand, within GFF2882at 7.150 kb on + strand, within GFF2882at 7.150 kb on + strand, within GFF2882at 7.162 kb on - strand, within GFF2882at 7.209 kb on + strand, within GFF2882at 7.209 kb on + strand, within GFF2882at 7.290 kb on + strand, within GFF2882

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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4,156 + -1.6
4,200 + GFF2880 0.12 -2.1
4,276 + GFF2880 0.19 -2.7
4,464 + GFF2880 0.37 -2.9
4,466 + GFF2880 0.37 -4.4
4,466 + GFF2880 0.37 -3.9
4,466 + GFF2880 0.37 -4.3
4,466 + GFF2880 0.37 -4.1
4,466 + GFF2880 0.37 -3.8
4,466 + GFF2880 0.37 -3.0
4,533 - GFF2880 0.43 -4.8
4,827 + GFF2880 0.70 -4.9
4,969 - GFF2880 0.83 -4.7
5,103 + -4.1
5,201 + -4.5
5,202 - -4.7
5,203 + -1.4
5,203 + -5.3
5,213 + -4.3
5,215 + -5.2
5,215 + -0.9
5,215 + -4.7
5,215 + -2.9
5,216 - -4.8
5,382 + GFF2881 0.19 -4.3
5,605 + GFF2881 0.37 -4.3
5,605 + GFF2881 0.37 -4.9
5,618 + GFF2881 0.38 -3.1
5,625 + GFF2881 0.38 -5.4
5,657 + GFF2881 0.41 -3.8
5,658 - GFF2881 0.41 -4.3
5,658 - GFF2881 0.41 -4.7
5,659 + GFF2881 0.41 -5.7
5,692 + GFF2881 0.44 -5.0
5,817 + GFF2881 0.54 -3.4
5,817 + GFF2881 0.54 -4.0
5,817 + GFF2881 0.54 -4.6
5,818 - GFF2881 0.54 -1.2
5,818 - GFF2881 0.54 -2.0
5,820 + GFF2881 0.54 -2.3
5,822 + GFF2881 0.54 -5.2
5,836 - GFF2881 0.55 -6.1
5,946 + GFF2881 0.64 -3.3
6,052 + GFF2881 0.73 -2.8
6,080 + GFF2881 0.75 -4.2
6,122 + GFF2881 0.78 -5.1
6,123 - GFF2881 0.78 -3.3
6,135 + GFF2881 0.79 -2.5
6,168 + GFF2881 0.82 -4.0
6,169 - GFF2881 0.82 -1.9
6,182 + GFF2881 0.83 -5.4
6,223 - GFF2881 0.86 -2.3
6,395 + -5.0
6,421 - -3.9
6,458 + -2.8
6,459 - -2.0
6,504 - -0.8
6,567 - GFF2882 0.15 -3.9
6,607 - GFF2882 0.19 -2.8
6,654 + GFF2882 0.23 -3.6
6,655 - GFF2882 0.23 -4.8
6,772 - GFF2882 0.33 -1.8
6,857 + GFF2882 0.41 -2.6
6,858 - GFF2882 0.41 -2.9
6,861 + GFF2882 0.41 -4.3
6,936 + GFF2882 0.48 -3.7
7,002 + GFF2882 0.53 -4.6
7,002 + GFF2882 0.53 -3.0
7,047 - GFF2882 0.57 -3.2
7,092 + GFF2882 0.61 -4.4
7,093 - GFF2882 0.62 -4.0
7,094 + GFF2882 0.62 -1.6
7,094 + GFF2882 0.62 +0.2
7,150 + GFF2882 0.67 -5.1
7,150 + GFF2882 0.67 -2.6
7,162 - GFF2882 0.68 -4.5
7,209 + GFF2882 0.72 -4.1
7,209 + GFF2882 0.72 -4.8
7,290 + GFF2882 0.79 -0.0

Or see this region's nucleotide sequence