Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2791 and GFF2792 overlap by 4 nucleotides GFF2792 and GFF2793 are separated by 74 nucleotides GFF2793 and GFF2794 are separated by 11 nucleotides
GFF2791 - Hydrogenase maturation factor hoxO, at 314,338 to 314,742
GFF2791
GFF2792 - Hydrogenase maturation factor HoxQ, at 314,739 to 315,587
GFF2792
GFF2793 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 315,662 to 317,206
GFF2793
GFF2794 - Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-), at 317,218 to 318,354
GFF2794
Position (kb) 315
316
317
318 Strain fitness (log2 ratio) -1
0
1 at 314.736 kb on - strand at 314.775 kb on - strand at 314.846 kb on + strand, within GFF2792 at 314.962 kb on + strand, within GFF2792 at 314.963 kb on - strand, within GFF2792 at 314.999 kb on + strand, within GFF2792 at 315.479 kb on + strand, within GFF2792 at 315.483 kb on + strand, within GFF2792 at 315.484 kb on - strand, within GFF2792 at 315.626 kb on + strand at 315.779 kb on + strand at 315.779 kb on + strand at 315.780 kb on - strand at 315.780 kb on - strand at 315.898 kb on + strand, within GFF2793 at 315.911 kb on + strand, within GFF2793 at 315.921 kb on - strand, within GFF2793 at 316.027 kb on + strand, within GFF2793 at 316.235 kb on + strand, within GFF2793 at 316.835 kb on - strand, within GFF2793 at 316.837 kb on + strand, within GFF2793 at 316.838 kb on - strand, within GFF2793 at 316.863 kb on + strand, within GFF2793 at 316.888 kb on - strand, within GFF2793 at 316.988 kb on - strand, within GFF2793 at 317.147 kb on + strand at 317.228 kb on - strand at 317.452 kb on + strand, within GFF2794 at 317.708 kb on + strand, within GFF2794 at 317.727 kb on - strand, within GFF2794 at 317.760 kb on + strand, within GFF2794 at 317.994 kb on - strand, within GFF2794 at 318.171 kb on + strand, within GFF2794
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 314,736 - -0.3 314,775 - +0.3 314,846 + GFF2792 0.13 +0.2 314,962 + GFF2792 0.26 -0.1 314,963 - GFF2792 0.26 -0.2 314,999 + GFF2792 0.31 +1.0 315,479 + GFF2792 0.87 +0.4 315,483 + GFF2792 0.88 +0.4 315,484 - GFF2792 0.88 -0.0 315,626 + +0.1 315,779 + +0.5 315,779 + +0.1 315,780 - -0.3 315,780 - +0.3 315,898 + GFF2793 0.15 -0.5 315,911 + GFF2793 0.16 -0.6 315,921 - GFF2793 0.17 -0.1 316,027 + GFF2793 0.24 +0.2 316,235 + GFF2793 0.37 +0.0 316,835 - GFF2793 0.76 -0.6 316,837 + GFF2793 0.76 -0.3 316,838 - GFF2793 0.76 -0.2 316,863 + GFF2793 0.78 +0.7 316,888 - GFF2793 0.79 -0.9 316,988 - GFF2793 0.86 -0.1 317,147 + -0.4 317,228 - +0.5 317,452 + GFF2794 0.21 +0.7 317,708 + GFF2794 0.43 -0.2 317,727 - GFF2794 0.45 +0.3 317,760 + GFF2794 0.48 +0.1 317,994 - GFF2794 0.68 -0.2 318,171 + GFF2794 0.84 +0.6
Or see this region's nucleotide sequence