Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2789 and GFF2790 overlap by 4 nucleotides GFF2790 and GFF2791 overlap by 11 nucleotides GFF2791 and GFF2792 overlap by 4 nucleotides GFF2792 and GFF2793 are separated by 74 nucleotides
GFF2789 - Ni,Fe-hydrogenase I cytochrome b subunit, at 313,024 to 313,755
GFF2789
GFF2790 - Hydrogenase maturation protease (EC 3.4.24.-), at 313,752 to 314,348
GFF2790
GFF2791 - Hydrogenase maturation factor hoxO, at 314,338 to 314,742
GFF2791
GFF2792 - Hydrogenase maturation factor HoxQ, at 314,739 to 315,587
GFF2792
GFF2793 - Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-), at 315,662 to 317,206
GFF2793
Position (kb) 314
315
316 Strain fitness (log2 ratio) -1
0
1 at 313.911 kb on + strand, within GFF2790 at 313.912 kb on - strand, within GFF2790 at 314.262 kb on + strand, within GFF2790 at 314.264 kb on + strand, within GFF2790 at 314.265 kb on - strand, within GFF2790 at 314.302 kb on + strand at 314.302 kb on + strand at 314.302 kb on + strand at 314.413 kb on - strand, within GFF2791 at 314.459 kb on + strand, within GFF2791 at 314.599 kb on - strand, within GFF2791 at 314.604 kb on - strand, within GFF2791 at 314.736 kb on - strand at 314.775 kb on - strand at 314.846 kb on + strand, within GFF2792 at 314.962 kb on + strand, within GFF2792 at 314.963 kb on - strand, within GFF2792 at 314.999 kb on + strand, within GFF2792 at 315.479 kb on + strand, within GFF2792 at 315.483 kb on + strand, within GFF2792 at 315.484 kb on - strand, within GFF2792 at 315.626 kb on + strand at 315.779 kb on + strand at 315.779 kb on + strand at 315.780 kb on - strand at 315.780 kb on - strand at 315.898 kb on + strand, within GFF2793 at 315.911 kb on + strand, within GFF2793 at 315.921 kb on - strand, within GFF2793 at 316.027 kb on + strand, within GFF2793 at 316.235 kb on + strand, within GFF2793
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 313,911 + GFF2790 0.27 +0.2 313,912 - GFF2790 0.27 +0.4 314,262 + GFF2790 0.85 +0.2 314,264 + GFF2790 0.86 +0.2 314,265 - GFF2790 0.86 +0.7 314,302 + +0.2 314,302 + +0.7 314,302 + -0.0 314,413 - GFF2791 0.19 -0.0 314,459 + GFF2791 0.30 -0.5 314,599 - GFF2791 0.64 -0.0 314,604 - GFF2791 0.66 +0.3 314,736 - -0.3 314,775 - +0.3 314,846 + GFF2792 0.13 +0.2 314,962 + GFF2792 0.26 -0.1 314,963 - GFF2792 0.26 -0.2 314,999 + GFF2792 0.31 +1.0 315,479 + GFF2792 0.87 +0.4 315,483 + GFF2792 0.88 +0.4 315,484 - GFF2792 0.88 -0.0 315,626 + +0.1 315,779 + +0.5 315,779 + +0.1 315,780 - -0.3 315,780 - +0.3 315,898 + GFF2793 0.15 -0.5 315,911 + GFF2793 0.16 -0.6 315,921 - GFF2793 0.17 -0.1 316,027 + GFF2793 0.24 +0.2 316,235 + GFF2793 0.37 +0.0
Or see this region's nucleotide sequence