Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2717 and GFF2718 overlap by 4 nucleotides GFF2718 and GFF2719 are separated by 86 nucleotides GFF2719 and GFF2720 are separated by 100 nucleotides GFF2720 and GFF2721 are separated by 7 nucleotides
GFF2717 - YciK-like oxidoreductase, at 239,987 to 240,748
GFF2717
GFF2718 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 240,745 to 241,335
GFF2718
GFF2719 - Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70), at 241,422 to 242,297
GFF2719
GFF2720 - Hypothetical YciO protein, TsaC/YrdC paralog, at 242,398 to 243,018
GFF2720
GFF2721 - COG0613, Predicted metal-dependent phosphoesterases (PHP family), at 243,026 to 243,874
GFF2721
Position (kb) 241
242
243 Strain fitness (log2 ratio) -1
0
1
2 at 240.433 kb on + strand, within GFF2717 at 240.480 kb on - strand, within GFF2717 at 240.782 kb on + strand at 240.834 kb on + strand, within GFF2718 at 240.859 kb on - strand, within GFF2718 at 240.936 kb on + strand, within GFF2718 at 241.059 kb on + strand, within GFF2718 at 241.110 kb on + strand, within GFF2718 at 241.135 kb on + strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.147 kb on + strand, within GFF2718 at 241.153 kb on + strand, within GFF2718 at 241.154 kb on - strand, within GFF2718 at 241.157 kb on + strand, within GFF2718 at 241.216 kb on - strand, within GFF2718 at 241.219 kb on - strand, within GFF2718 at 241.330 kb on + strand at 241.406 kb on + strand at 241.407 kb on - strand at 241.465 kb on - strand at 241.465 kb on - strand at 241.583 kb on - strand, within GFF2719 at 241.748 kb on - strand, within GFF2719 at 241.790 kb on + strand, within GFF2719 at 241.791 kb on - strand, within GFF2719 at 241.902 kb on - strand, within GFF2719 at 242.081 kb on - strand, within GFF2719 at 242.297 kb on + strand at 242.399 kb on + strand at 242.402 kb on - strand at 242.671 kb on - strand, within GFF2720 at 242.730 kb on - strand, within GFF2720 at 242.781 kb on - strand, within GFF2720 at 242.787 kb on - strand, within GFF2720 at 242.932 kb on - strand, within GFF2720 at 242.932 kb on - strand, within GFF2720 at 243.001 kb on - strand at 243.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 240,433 + GFF2717 0.59 +1.7 240,480 - GFF2717 0.65 -0.9 240,782 + +0.6 240,834 + GFF2718 0.15 -0.3 240,859 - GFF2718 0.19 +0.3 240,936 + GFF2718 0.32 +0.0 241,059 + GFF2718 0.53 +0.0 241,110 + GFF2718 0.62 +0.2 241,135 + GFF2718 0.66 +0.6 241,136 - GFF2718 0.66 +1.8 241,136 - GFF2718 0.66 -0.1 241,147 + GFF2718 0.68 +0.3 241,153 + GFF2718 0.69 +0.3 241,154 - GFF2718 0.69 +0.2 241,157 + GFF2718 0.70 +0.3 241,216 - GFF2718 0.80 -0.2 241,219 - GFF2718 0.80 +0.4 241,330 + -0.0 241,406 + -0.1 241,407 - -0.0 241,465 - +0.5 241,465 - -0.1 241,583 - GFF2719 0.18 -0.9 241,748 - GFF2719 0.37 -1.0 241,790 + GFF2719 0.42 -1.3 241,791 - GFF2719 0.42 -1.1 241,902 - GFF2719 0.55 -1.2 242,081 - GFF2719 0.75 -0.7 242,297 + -0.5 242,399 + -0.9 242,402 - -1.6 242,671 - GFF2720 0.44 +0.4 242,730 - GFF2720 0.53 -0.4 242,781 - GFF2720 0.62 -0.0 242,787 - GFF2720 0.63 -0.1 242,932 - GFF2720 0.86 +0.1 242,932 - GFF2720 0.86 +0.4 243,001 - +0.1 243,003 - -0.0
Or see this region's nucleotide sequence