Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2716 and GFF2717 are separated by 237 nucleotides GFF2717 and GFF2718 overlap by 4 nucleotides GFF2718 and GFF2719 are separated by 86 nucleotides
GFF2716 - Possible protease sohB (EC 3.4.21.-), at 238,703 to 239,749
GFF2716
GFF2717 - YciK-like oxidoreductase, at 239,987 to 240,748
GFF2717
GFF2718 - Cob(I)alamin adenosyltransferase (EC 2.5.1.17), at 240,745 to 241,335
GFF2718
GFF2719 - Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70), at 241,422 to 242,297
GFF2719
Position (kb) 239
240
241 Strain fitness (log2 ratio) -1
0
1
2 at 239.092 kb on + strand, within GFF2716 at 239.105 kb on - strand, within GFF2716 at 239.164 kb on + strand, within GFF2716 at 239.165 kb on - strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.209 kb on + strand, within GFF2716 at 239.211 kb on + strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.436 kb on - strand, within GFF2716 at 239.516 kb on - strand, within GFF2716 at 239.656 kb on + strand at 239.765 kb on + strand at 239.791 kb on - strand at 239.982 kb on + strand at 240.028 kb on + strand at 240.081 kb on - strand, within GFF2717 at 240.255 kb on - strand, within GFF2717 at 240.433 kb on + strand, within GFF2717 at 240.480 kb on - strand, within GFF2717 at 240.782 kb on + strand at 240.834 kb on + strand, within GFF2718 at 240.859 kb on - strand, within GFF2718 at 240.936 kb on + strand, within GFF2718 at 241.059 kb on + strand, within GFF2718 at 241.110 kb on + strand, within GFF2718 at 241.135 kb on + strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.136 kb on - strand, within GFF2718 at 241.147 kb on + strand, within GFF2718 at 241.153 kb on + strand, within GFF2718 at 241.154 kb on - strand, within GFF2718 at 241.157 kb on + strand, within GFF2718 at 241.216 kb on - strand, within GFF2718 at 241.219 kb on - strand, within GFF2718 at 241.330 kb on + strand at 241.406 kb on + strand at 241.407 kb on - strand at 241.465 kb on - strand at 241.465 kb on - strand at 241.583 kb on - strand, within GFF2719 at 241.748 kb on - strand, within GFF2719
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 239,092 + GFF2716 0.37 -0.2 239,105 - GFF2716 0.38 +0.1 239,164 + GFF2716 0.44 -0.0 239,165 - GFF2716 0.44 -0.0 239,209 + GFF2716 0.48 +0.4 239,209 + GFF2716 0.48 -0.0 239,209 + GFF2716 0.48 -0.6 239,211 + GFF2716 0.49 +0.7 239,436 - GFF2716 0.70 +0.2 239,436 - GFF2716 0.70 -0.1 239,436 - GFF2716 0.70 +0.1 239,516 - GFF2716 0.78 -0.5 239,656 + -0.7 239,765 + +0.3 239,791 - -1.2 239,982 + +0.3 240,028 + +0.9 240,081 - GFF2717 0.12 +1.1 240,255 - GFF2717 0.35 +1.3 240,433 + GFF2717 0.59 +1.7 240,480 - GFF2717 0.65 -0.9 240,782 + +0.6 240,834 + GFF2718 0.15 -0.3 240,859 - GFF2718 0.19 +0.3 240,936 + GFF2718 0.32 +0.0 241,059 + GFF2718 0.53 +0.0 241,110 + GFF2718 0.62 +0.2 241,135 + GFF2718 0.66 +0.6 241,136 - GFF2718 0.66 +1.8 241,136 - GFF2718 0.66 -0.1 241,147 + GFF2718 0.68 +0.3 241,153 + GFF2718 0.69 +0.3 241,154 - GFF2718 0.69 +0.2 241,157 + GFF2718 0.70 +0.3 241,216 - GFF2718 0.80 -0.2 241,219 - GFF2718 0.80 +0.4 241,330 + -0.0 241,406 + -0.1 241,407 - -0.0 241,465 - +0.5 241,465 - -0.1 241,583 - GFF2719 0.18 -0.9 241,748 - GFF2719 0.37 -1.0
Or see this region's nucleotide sequence