Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2690 and GFF2691 overlap by 1 nucleotides GFF2691 and GFF2692 are separated by 1 nucleotides GFF2692 and GFF2693 are separated by 15 nucleotides GFF2693 and GFF2694 overlap by 13 nucleotides
GFF2690 - Peptide transport system permease protein SapC, at 211,894 to 212,784
GFF2690
GFF2691 - Peptide transport system ATP-binding protein SapD, at 212,784 to 213,776
GFF2691
GFF2692 - Peptide transport system ATP-binding protein SapF, at 213,778 to 214,584
GFF2692
GFF2693 - FIG01046389: hypothetical protein, at 214,600 to 214,725
GFF2693
GFF2694 - FIG01046389: hypothetical protein, at 214,713 to 215,309
GFF2694
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.051 kb on - strand, within GFF2691 at 213.051 kb on - strand, within GFF2691 at 213.478 kb on + strand, within GFF2691 at 214.324 kb on - strand, within GFF2692 at 214.387 kb on + strand, within GFF2692 at 214.388 kb on - strand, within GFF2692 at 214.390 kb on - strand, within GFF2692 at 214.393 kb on + strand, within GFF2692 at 214.394 kb on - strand, within GFF2692 at 214.425 kb on + strand, within GFF2692 at 214.426 kb on - strand, within GFF2692 at 214.428 kb on + strand, within GFF2692 at 214.727 kb on + strand at 214.918 kb on - strand, within GFF2694 at 214.950 kb on + strand, within GFF2694 at 215.013 kb on + strand, within GFF2694 at 215.014 kb on - strand, within GFF2694 at 215.014 kb on - strand, within GFF2694 at 215.026 kb on - strand, within GFF2694 at 215.410 kb on + strand at 215.483 kb on + strand at 215.574 kb on + strand at 215.575 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 213,051 - GFF2691 0.27 -0.6 213,051 - GFF2691 0.27 +1.0 213,478 + GFF2691 0.70 -1.3 214,324 - GFF2692 0.68 -0.5 214,387 + GFF2692 0.75 -2.9 214,388 - GFF2692 0.76 -2.1 214,390 - GFF2692 0.76 -0.8 214,393 + GFF2692 0.76 -1.8 214,394 - GFF2692 0.76 -1.6 214,425 + GFF2692 0.80 -0.7 214,426 - GFF2692 0.80 -0.4 214,428 + GFF2692 0.81 -0.2 214,727 + +0.4 214,918 - GFF2694 0.34 -0.6 214,950 + GFF2694 0.40 +0.1 215,013 + GFF2694 0.50 -0.1 215,014 - GFF2694 0.50 -0.0 215,014 - GFF2694 0.50 +0.2 215,026 - GFF2694 0.52 -0.2 215,410 + +0.2 215,483 + -1.4 215,574 + +0.3 215,575 - -0.3
Or see this region's nucleotide sequence