Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2690

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2688 and GFF2689 overlap by 4 nucleotidesGFF2689 and GFF2690 overlap by 14 nucleotidesGFF2690 and GFF2691 overlap by 1 nucleotidesGFF2691 and GFF2692 are separated by 1 nucleotides GFF2688 - Peptide transport periplasmic protein SapA, at 209,410 to 210,945 GFF2688 GFF2689 - Peptide transport system permease protein SapB, at 210,942 to 211,907 GFF2689 GFF2690 - Peptide transport system permease protein SapC, at 211,894 to 212,784 GFF2690 GFF2691 - Peptide transport system ATP-binding protein SapD, at 212,784 to 213,776 GFF2691 GFF2692 - Peptide transport system ATP-binding protein SapF, at 213,778 to 214,584 GFF2692 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1at 211.487 kb on + strand, within GFF2689at 211.559 kb on + strand, within GFF2689at 211.581 kb on + strand, within GFF2689at 211.782 kb on + strand, within GFF2689at 212.226 kb on - strand, within GFF2690at 212.414 kb on + strand, within GFF2690at 212.666 kb on + strand, within GFF2690at 213.051 kb on - strand, within GFF2691at 213.051 kb on - strand, within GFF2691at 213.478 kb on + strand, within GFF2691

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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211,487 + GFF2689 0.56 -0.6
211,559 + GFF2689 0.64 +0.9
211,581 + GFF2689 0.66 -0.9
211,782 + GFF2689 0.87 -0.8
212,226 - GFF2690 0.37 -1.2
212,414 + GFF2690 0.58 -1.3
212,666 + GFF2690 0.87 -3.3
213,051 - GFF2691 0.27 -0.6
213,051 - GFF2691 0.27 +1.0
213,478 + GFF2691 0.70 -1.3

Or see this region's nucleotide sequence