Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2654 and GFF2655 are separated by 257 nucleotides GFF2655 and GFF2656 are separated by 195 nucleotides GFF2656 and GFF2657 are separated by 150 nucleotides
GFF2654 - FIG00638524: hypothetical protein, at 178,460 to 179,023
GFF2654
GFF2655 - Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63), at 179,281 to 179,796
GFF2655
GFF2656 - Fumarate and nitrate reduction regulatory protein, at 179,992 to 180,744
GFF2656
GFF2657 - Universal stress protein E, at 180,895 to 181,842
GFF2657
Position (kb) 179
180
181 Strain fitness (log2 ratio) -2
-1
0
1 at 179.163 kb on - strand at 179.170 kb on + strand at 179.239 kb on - strand at 179.239 kb on - strand at 179.250 kb on + strand at 179.255 kb on + strand at 179.392 kb on - strand, within GFF2655 at 179.991 kb on + strand at 180.196 kb on + strand, within GFF2656 at 180.226 kb on + strand, within GFF2656 at 180.258 kb on + strand, within GFF2656 at 180.272 kb on + strand, within GFF2656 at 180.676 kb on - strand at 180.679 kb on + strand at 180.679 kb on + strand at 180.680 kb on - strand at 180.681 kb on + strand at 180.684 kb on + strand at 180.856 kb on + strand at 180.882 kb on - strand at 180.971 kb on - strand at 181.158 kb on + strand, within GFF2657 at 181.158 kb on + strand, within GFF2657 at 181.397 kb on - strand, within GFF2657 at 181.436 kb on + strand, within GFF2657 at 181.461 kb on + strand, within GFF2657 at 181.629 kb on - strand, within GFF2657
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 179,163 - -0.9 179,170 + -0.2 179,239 - -0.9 179,239 - -1.5 179,250 + +0.1 179,255 + +0.4 179,392 - GFF2655 0.22 -0.2 179,991 + -0.3 180,196 + GFF2656 0.27 -0.7 180,226 + GFF2656 0.31 -0.3 180,258 + GFF2656 0.35 -0.4 180,272 + GFF2656 0.37 -1.8 180,676 - -0.3 180,679 + -1.5 180,679 + +0.6 180,680 - -0.1 180,681 + -0.8 180,684 + -1.0 180,856 + +0.6 180,882 - +0.3 180,971 - +0.1 181,158 + GFF2657 0.28 +1.4 181,158 + GFF2657 0.28 +0.2 181,397 - GFF2657 0.53 -0.6 181,436 + GFF2657 0.57 -0.0 181,461 + GFF2657 0.60 +0.1 181,629 - GFF2657 0.77 +0.2
Or see this region's nucleotide sequence