Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2628

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2626 and GFF2627 overlap by 4 nucleotidesGFF2627 and GFF2628 are separated by 136 nucleotidesGFF2628 and GFF2629 are separated by 463 nucleotides GFF2626 - ABC transporter ATP-binding subunit, at 150,949 to 151,680 GFF2626 GFF2627 - putative amino acid ABC transporter, at 151,677 to 152,357 GFF2627 GFF2628 - putative membrane protein, at 152,494 to 154,044 GFF2628 GFF2629 - Putative SAM-dependent methyltransferases, at 154,508 to 155,170 GFF2629 Position (kb) 152 153 154 155Strain fitness (log2 ratio) -1 0 1at 151.557 kb on - strand, within GFF2626at 152.098 kb on + strand, within GFF2627at 152.279 kb on + strand, within GFF2627at 152.324 kb on + strandat 152.324 kb on + strandat 152.554 kb on - strandat 152.594 kb on + strandat 152.758 kb on - strand, within GFF2628at 152.850 kb on + strand, within GFF2628at 152.902 kb on + strand, within GFF2628at 152.924 kb on - strand, within GFF2628at 153.024 kb on + strand, within GFF2628at 153.025 kb on - strand, within GFF2628at 153.064 kb on - strand, within GFF2628at 153.096 kb on - strand, within GFF2628at 153.393 kb on - strand, within GFF2628at 153.765 kb on + strand, within GFF2628at 153.863 kb on - strand, within GFF2628at 154.563 kb on + strandat 154.630 kb on - strand, within GFF2629at 154.871 kb on + strand, within GFF2629at 154.887 kb on + strand, within GFF2629

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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151,557 - GFF2626 0.83 +0.7
152,098 + GFF2627 0.62 -0.0
152,279 + GFF2627 0.88 -0.2
152,324 + +0.7
152,324 + +0.1
152,554 - +0.6
152,594 + +0.2
152,758 - GFF2628 0.17 -0.2
152,850 + GFF2628 0.23 -0.8
152,902 + GFF2628 0.26 -0.0
152,924 - GFF2628 0.28 +1.1
153,024 + GFF2628 0.34 -0.4
153,025 - GFF2628 0.34 +0.1
153,064 - GFF2628 0.37 +0.0
153,096 - GFF2628 0.39 -0.2
153,393 - GFF2628 0.58 -0.1
153,765 + GFF2628 0.82 +0.7
153,863 - GFF2628 0.88 +0.4
154,563 + +0.2
154,630 - GFF2629 0.18 -0.8
154,871 + GFF2629 0.55 +0.7
154,887 + GFF2629 0.57 -0.6

Or see this region's nucleotide sequence