Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2602 and GFF2603 overlap by 4 nucleotides GFF2603 and GFF2604 are separated by 10 nucleotides GFF2604 and GFF2605 are separated by 13 nucleotides GFF2605 and GFF2606 are separated by 131 nucleotides
GFF2602 - Putative sgc region protein sgcX, at 127,416 to 128,534
GFF2602
GFF2603 - Putative phosphotransferase enzyme, at 128,531 to 128,812
GFF2603
GFF2604 - PTS system, galactitol-specific IIC component (EC 2.7.1.69), at 128,823 to 130,136
GFF2604
GFF2605 - Putative nucleoside triphosphatase, at 130,150 to 130,956
GFF2605
GFF2606 - PTS system, IIA component, at 131,088 to 131,525
GFF2606
Position (kb) 128
129
130
131 Strain fitness (log2 ratio) -1
0
1 at 127.936 kb on + strand, within GFF2602 at 127.937 kb on - strand, within GFF2602 at 128.114 kb on + strand, within GFF2602 at 128.205 kb on + strand, within GFF2602 at 128.396 kb on + strand, within GFF2602 at 128.452 kb on + strand at 128.890 kb on + strand at 128.901 kb on - strand at 129.176 kb on + strand, within GFF2604 at 129.180 kb on + strand, within GFF2604 at 129.180 kb on + strand, within GFF2604 at 129.195 kb on + strand, within GFF2604 at 129.385 kb on + strand, within GFF2604 at 129.400 kb on + strand, within GFF2604 at 129.400 kb on + strand, within GFF2604 at 129.539 kb on + strand, within GFF2604 at 129.622 kb on + strand, within GFF2604 at 129.763 kb on + strand, within GFF2604 at 129.764 kb on - strand, within GFF2604 at 129.876 kb on - strand, within GFF2604 at 129.905 kb on + strand, within GFF2604 at 129.906 kb on - strand, within GFF2604 at 129.940 kb on - strand, within GFF2604 at 130.019 kb on + strand at 130.101 kb on + strand at 130.102 kb on + strand at 130.102 kb on + strand at 130.111 kb on + strand at 130.115 kb on + strand at 130.348 kb on + strand, within GFF2605 at 131.103 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 127,936 + GFF2602 0.46 +0.1 127,937 - GFF2602 0.47 +0.2 128,114 + GFF2602 0.62 +0.2 128,205 + GFF2602 0.71 +0.1 128,396 + GFF2602 0.88 -0.7 128,452 + +0.7 128,890 + -0.0 128,901 - +0.4 129,176 + GFF2604 0.27 -0.4 129,180 + GFF2604 0.27 +0.3 129,180 + GFF2604 0.27 -0.0 129,195 + GFF2604 0.28 +1.2 129,385 + GFF2604 0.43 +0.2 129,400 + GFF2604 0.44 +0.6 129,400 + GFF2604 0.44 +0.7 129,539 + GFF2604 0.54 +0.5 129,622 + GFF2604 0.61 +0.8 129,763 + GFF2604 0.72 +0.4 129,764 - GFF2604 0.72 +0.4 129,876 - GFF2604 0.80 +0.7 129,905 + GFF2604 0.82 +0.1 129,906 - GFF2604 0.82 -0.4 129,940 - GFF2604 0.85 -0.9 130,019 + -0.0 130,101 + -0.2 130,102 + -0.2 130,102 + -0.1 130,111 + +0.0 130,115 + +0.3 130,348 + GFF2605 0.25 +0.1 131,103 - +0.4
Or see this region's nucleotide sequence