Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2557 and GFF2558 are separated by 90 nucleotides GFF2558 and GFF2559 overlap by 8 nucleotides GFF2559 and GFF2560 are separated by 13 nucleotides
GFF2557 - Alcohol dehydrogenase (EC 1.1.1.1), at 73,411 to 74,421
GFF2557
GFF2558 - Formate dehydrogenase N gamma subunit (EC 1.2.1.2), at 74,512 to 75,168
GFF2558
GFF2559 - Formate dehydrogenase N beta subunit (EC 1.2.1.2), at 75,161 to 76,045
GFF2559
GFF2560 - Formate dehydrogenase N alpha subunit (EC 1.2.1.2) @ selenocysteine-containing, at 76,059 to 79,106
GFF2560
Position (kb) 74
75
76 Strain fitness (log2 ratio) -1
0
1 at 73.532 kb on + strand, within GFF2557 at 73.666 kb on + strand, within GFF2557 at 73.666 kb on + strand, within GFF2557 at 73.774 kb on - strand, within GFF2557 at 73.887 kb on + strand, within GFF2557 at 73.887 kb on + strand, within GFF2557 at 73.888 kb on - strand, within GFF2557 at 73.912 kb on + strand, within GFF2557 at 74.043 kb on + strand, within GFF2557 at 74.148 kb on - strand, within GFF2557 at 74.398 kb on - strand at 74.445 kb on + strand at 74.658 kb on - strand, within GFF2558 at 74.658 kb on - strand, within GFF2558 at 74.658 kb on - strand, within GFF2558 at 74.661 kb on + strand, within GFF2558 at 74.662 kb on - strand, within GFF2558 at 74.662 kb on - strand, within GFF2558 at 74.662 kb on - strand, within GFF2558 at 74.718 kb on + strand, within GFF2558 at 74.719 kb on - strand, within GFF2558 at 74.808 kb on + strand, within GFF2558 at 74.809 kb on - strand, within GFF2558 at 74.844 kb on - strand, within GFF2558 at 74.844 kb on - strand, within GFF2558 at 74.865 kb on + strand, within GFF2558 at 74.866 kb on - strand, within GFF2558 at 74.885 kb on - strand, within GFF2558 at 75.050 kb on - strand, within GFF2558 at 75.220 kb on - strand at 75.220 kb on - strand at 75.369 kb on + strand, within GFF2559 at 75.409 kb on + strand, within GFF2559 at 75.745 kb on + strand, within GFF2559 at 75.745 kb on + strand, within GFF2559 at 75.746 kb on - strand, within GFF2559 at 75.850 kb on - strand, within GFF2559 at 75.883 kb on + strand, within GFF2559 at 75.969 kb on + strand at 76.045 kb on + strand at 76.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 73,532 + GFF2557 0.12 -0.0 73,666 + GFF2557 0.25 +0.1 73,666 + GFF2557 0.25 +1.1 73,774 - GFF2557 0.36 +0.7 73,887 + GFF2557 0.47 +0.2 73,887 + GFF2557 0.47 +0.1 73,888 - GFF2557 0.47 -0.8 73,912 + GFF2557 0.50 +0.7 74,043 + GFF2557 0.63 +0.9 74,148 - GFF2557 0.73 +0.3 74,398 - +0.1 74,445 + +0.1 74,658 - GFF2558 0.22 -0.0 74,658 - GFF2558 0.22 +0.0 74,658 - GFF2558 0.22 +0.6 74,661 + GFF2558 0.23 -0.5 74,662 - GFF2558 0.23 +0.1 74,662 - GFF2558 0.23 -0.5 74,662 - GFF2558 0.23 +0.2 74,718 + GFF2558 0.31 -0.4 74,719 - GFF2558 0.32 +0.1 74,808 + GFF2558 0.45 -0.3 74,809 - GFF2558 0.45 -0.3 74,844 - GFF2558 0.51 -0.7 74,844 - GFF2558 0.51 -0.4 74,865 + GFF2558 0.54 +0.2 74,866 - GFF2558 0.54 -0.6 74,885 - GFF2558 0.57 -1.3 75,050 - GFF2558 0.82 +0.0 75,220 - -0.0 75,220 - +0.3 75,369 + GFF2559 0.24 -0.4 75,409 + GFF2559 0.28 +0.7 75,745 + GFF2559 0.66 +0.1 75,745 + GFF2559 0.66 +0.2 75,746 - GFF2559 0.66 -0.4 75,850 - GFF2559 0.78 -0.1 75,883 + GFF2559 0.82 +0.2 75,969 + +0.2 76,045 + +0.1 76,046 - +0.2
Or see this region's nucleotide sequence