Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2551 and GFF2552 are separated by 142 nucleotides GFF2552 and GFF2553 are separated by 349 nucleotides GFF2553 and GFF2554 are separated by 512 nucleotides GFF2554 and GFF2555 are separated by 94 nucleotides
GFF2551 - Putative outer membrane or secreted lipoprotein, at 68,247 to 69,032
GFF2551
GFF2552 - Putative secreted protein, at 69,175 to 69,504
GFF2552
GFF2553 - Osmotically inducible protein C, at 69,854 to 70,285
GFF2553
GFF2554 - Bdm protein, at 70,798 to 71,013
GFF2554
GFF2555 - Stationary-phase-induced ribosome-associated protein, at 71,108 to 71,251
GFF2555
Position (kb) 69
70
71 Strain fitness (log2 ratio) -1
0
1 at 68.862 kb on - strand, within GFF2551 at 68.862 kb on - strand, within GFF2551 at 68.923 kb on - strand, within GFF2551 at 68.951 kb on + strand, within GFF2551 at 69.420 kb on + strand, within GFF2552 at 69.421 kb on - strand, within GFF2552 at 69.423 kb on + strand, within GFF2552 at 69.423 kb on + strand, within GFF2552 at 69.693 kb on - strand at 69.753 kb on + strand at 69.809 kb on - strand at 70.220 kb on + strand, within GFF2553 at 70.400 kb on - strand at 70.963 kb on + strand, within GFF2554 at 70.963 kb on + strand, within GFF2554 at 70.981 kb on + strand, within GFF2554 at 70.982 kb on - strand, within GFF2554 at 71.047 kb on + strand at 71.079 kb on - strand at 71.136 kb on + strand, within GFF2555 at 71.136 kb on + strand, within GFF2555 at 71.137 kb on - strand, within GFF2555 at 71.179 kb on + strand, within GFF2555 at 71.256 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 68,862 - GFF2551 0.78 -0.0 68,862 - GFF2551 0.78 +0.1 68,923 - GFF2551 0.86 -0.6 68,951 + GFF2551 0.90 +0.6 69,420 + GFF2552 0.74 +0.3 69,421 - GFF2552 0.75 -0.9 69,423 + GFF2552 0.75 -0.9 69,423 + GFF2552 0.75 +0.2 69,693 - -0.1 69,753 + -0.0 69,809 - -0.1 70,220 + GFF2553 0.85 -0.8 70,400 - +0.1 70,963 + GFF2554 0.76 -1.3 70,963 + GFF2554 0.76 -0.1 70,981 + GFF2554 0.85 -0.4 70,982 - GFF2554 0.85 +0.2 71,047 + +0.3 71,079 - +0.7 71,136 + GFF2555 0.19 -0.0 71,136 + GFF2555 0.19 +0.1 71,137 - GFF2555 0.20 -0.6 71,179 + GFF2555 0.49 -0.2 71,256 - +0.4
Or see this region's nucleotide sequence