Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2511 and GFF2512 are separated by 72 nucleotides GFF2512 and GFF2513 overlap by 1 nucleotides GFF2513 and GFF2514 are separated by 223 nucleotides
GFF2511 - Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 26,800 to 28,188
GFF2511
GFF2512 - Glutaminase (EC 3.5.1.2), at 28,261 to 29,187
GFF2512
GFF2513 - FIG00637950: hypothetical protein, at 29,187 to 29,546
GFF2513
GFF2514 - FIG00638206: hypothetical protein, at 29,770 to 30,717
GFF2514
Position (kb) 29
30 Strain fitness (log2 ratio) -1
0
1 at 28.279 kb on - strand at 28.417 kb on + strand, within GFF2512 at 28.713 kb on + strand, within GFF2512 at 28.713 kb on + strand, within GFF2512 at 28.835 kb on - strand, within GFF2512 at 28.843 kb on + strand, within GFF2512 at 28.844 kb on - strand, within GFF2512 at 29.392 kb on + strand, within GFF2513 at 29.494 kb on - strand, within GFF2513 at 29.495 kb on + strand, within GFF2513 at 29.527 kb on + strand at 29.579 kb on - strand at 29.601 kb on - strand at 29.621 kb on + strand at 29.622 kb on - strand at 29.622 kb on - strand at 29.907 kb on + strand, within GFF2514 at 29.919 kb on + strand, within GFF2514 at 29.919 kb on + strand, within GFF2514 at 29.974 kb on - strand, within GFF2514 at 29.974 kb on - strand, within GFF2514 at 30.276 kb on + strand, within GFF2514 at 30.277 kb on - strand, within GFF2514 at 30.508 kb on - strand, within GFF2514
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 28,279 - +0.2 28,417 + GFF2512 0.17 +0.3 28,713 + GFF2512 0.49 -0.3 28,713 + GFF2512 0.49 -0.3 28,835 - GFF2512 0.62 -0.2 28,843 + GFF2512 0.63 +0.3 28,844 - GFF2512 0.63 +0.1 29,392 + GFF2513 0.57 -0.1 29,494 - GFF2513 0.85 +0.6 29,495 + GFF2513 0.86 -0.1 29,527 + +0.4 29,579 - -0.9 29,601 - -0.2 29,621 + +0.1 29,622 - +0.3 29,622 - +0.2 29,907 + GFF2514 0.14 -0.1 29,919 + GFF2514 0.16 +0.5 29,919 + GFF2514 0.16 -0.3 29,974 - GFF2514 0.22 -0.1 29,974 - GFF2514 0.22 +0.2 30,276 + GFF2514 0.53 +0.4 30,277 - GFF2514 0.53 +0.4 30,508 - GFF2514 0.78 +0.5
Or see this region's nucleotide sequence