Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2509
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
23,659 | - | -0.1 | |||
23,793 | + | +0.6 | |||
23,800 | + | -0.3 | |||
23,803 | + | -0.3 | |||
23,803 | + | -0.4 | |||
23,806 | + | -0.5 | |||
23,940 | - | GFF2508 | 0.20 | +0.4 | |
23,942 | - | GFF2508 | 0.20 | -0.2 | |
23,969 | - | GFF2508 | 0.24 | +0.6 | |
24,181 | + | GFF2508 | 0.56 | +0.3 | |
24,349 | + | GFF2508 | 0.81 | +0.8 | |
24,470 | + | +0.2 | |||
24,609 | - | -0.1 | |||
24,610 | + | +0.1 | |||
24,650 | + | GFF2509 | 0.11 | +0.7 | |
24,650 | + | GFF2509 | 0.11 | +0.1 | |
24,902 | + | GFF2509 | 0.32 | +0.2 | |
25,018 | + | GFF2509 | 0.42 | +0.6 | |
25,018 | + | GFF2509 | 0.42 | -0.5 | |
25,018 | + | GFF2509 | 0.42 | -0.6 | |
25,018 | + | GFF2509 | 0.42 | +0.2 | |
25,022 | + | GFF2509 | 0.42 | +0.6 | |
25,022 | + | GFF2509 | 0.42 | +0.3 | |
25,022 | + | GFF2509 | 0.42 | -0.1 | |
25,023 | - | GFF2509 | 0.42 | +1.4 | |
25,024 | + | GFF2509 | 0.42 | +0.4 | |
25,025 | - | GFF2509 | 0.42 | +0.1 | |
25,067 | - | GFF2509 | 0.46 | +0.0 | |
25,067 | - | GFF2509 | 0.46 | -0.6 | |
25,146 | + | GFF2509 | 0.53 | +0.6 | |
25,165 | - | GFF2509 | 0.54 | +0.5 | |
25,165 | - | GFF2509 | 0.54 | -1.5 | |
25,165 | - | GFF2509 | 0.54 | +0.1 | |
25,172 | + | GFF2509 | 0.55 | +0.3 | |
25,172 | + | GFF2509 | 0.55 | -0.6 | |
25,243 | - | GFF2509 | 0.61 | +0.2 | |
25,293 | + | GFF2509 | 0.65 | +0.3 | |
25,293 | + | GFF2509 | 0.65 | -0.2 | |
25,294 | - | GFF2509 | 0.65 | +0.4 | |
25,661 | + | +0.1 | |||
25,662 | - | -0.3 | |||
25,753 | + | +0.4 | |||
25,855 | + | +0.7 | |||
25,986 | + | GFF2510 | 0.18 | +0.8 | |
25,987 | - | GFF2510 | 0.19 | -0.6 | |
25,987 | - | GFF2510 | 0.19 | +1.0 | |
26,148 | + | GFF2510 | 0.37 | +0.4 | |
26,151 | - | GFF2510 | 0.37 | +0.0 | |
26,366 | + | GFF2510 | 0.62 | +1.6 | |
26,367 | - | GFF2510 | 0.62 | +0.2 | |
26,389 | - | GFF2510 | 0.65 | -0.0 | |
26,498 | + | GFF2510 | 0.77 | -0.0 | |
26,644 | - | +0.6 | |||
26,670 | + | +0.4 |
Or see this region's nucleotide sequence