Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2387 and GFF2388 are separated by 262 nucleotides GFF2388 and GFF2389 are separated by 141 nucleotides GFF2389 and GFF2390 are separated by 21 nucleotides
GFF2387 - transcriptional regulator, MerR family, at 15,974 to 16,399
GFF2387
GFF2388 - Large-conductance mechanosensitive channel, at 16,662 to 17,075
GFF2388
GFF2389 - Trk system potassium uptake protein TrkA, at 17,217 to 18,593
GFF2389
GFF2390 - 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967, at 18,615 to 19,904
GFF2390
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.333 kb on + strand, within GFF2387 at 16.340 kb on + strand, within GFF2387 at 16.438 kb on + strand at 16.457 kb on - strand at 16.474 kb on + strand at 16.488 kb on + strand at 16.661 kb on - strand at 16.831 kb on - strand, within GFF2388 at 16.853 kb on - strand, within GFF2388 at 16.899 kb on - strand, within GFF2388 at 16.899 kb on - strand, within GFF2388 at 17.563 kb on - strand, within GFF2389 at 17.563 kb on - strand, within GFF2389 at 17.563 kb on - strand, within GFF2389 at 17.831 kb on - strand, within GFF2389 at 18.090 kb on - strand, within GFF2389 at 18.460 kb on - strand at 18.736 kb on - strand at 18.736 kb on - strand at 18.951 kb on - strand, within GFF2390 at 18.951 kb on - strand, within GFF2390 at 18.988 kb on + strand, within GFF2390 at 19.116 kb on - strand, within GFF2390 at 19.116 kb on - strand, within GFF2390 at 19.278 kb on + strand, within GFF2390 at 19.332 kb on + strand, within GFF2390 at 19.333 kb on - strand, within GFF2390 at 19.364 kb on + strand, within GFF2390 at 19.372 kb on - strand, within GFF2390 at 19.412 kb on + strand, within GFF2390 at 19.555 kb on - strand, within GFF2390
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 16,333 + GFF2387 0.84 -0.1 16,340 + GFF2387 0.86 -0.8 16,438 + +0.9 16,457 - +0.8 16,474 + +0.6 16,488 + +0.3 16,661 - +0.6 16,831 - GFF2388 0.41 +0.5 16,853 - GFF2388 0.46 +0.3 16,899 - GFF2388 0.57 +0.6 16,899 - GFF2388 0.57 +0.8 17,563 - GFF2389 0.25 -1.4 17,563 - GFF2389 0.25 -1.4 17,563 - GFF2389 0.25 -1.3 17,831 - GFF2389 0.45 -1.2 18,090 - GFF2389 0.63 -2.4 18,460 - -1.3 18,736 - +0.6 18,736 - +0.1 18,951 - GFF2390 0.26 -0.8 18,951 - GFF2390 0.26 -0.3 18,988 + GFF2390 0.29 -1.2 19,116 - GFF2390 0.39 -0.2 19,116 - GFF2390 0.39 +0.2 19,278 + GFF2390 0.51 -0.5 19,332 + GFF2390 0.56 +0.1 19,333 - GFF2390 0.56 +0.0 19,364 + GFF2390 0.58 +0.6 19,372 - GFF2390 0.59 -1.0 19,412 + GFF2390 0.62 +0.5 19,555 - GFF2390 0.73 +0.7
Or see this region's nucleotide sequence