Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2349

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2348 and GFF2349 are separated by 267 nucleotidesGFF2349 and GFF2350 are separated by 15 nucleotidesGFF2350 and GFF2351 are separated by 46 nucleotides GFF2348 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 142,904 to 144,238 GFF2348 GFF2349 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 144,506 to 145,138 GFF2349 GFF2350 - Putative inner membrane protein, at 145,154 to 145,513 GFF2350 GFF2351 - tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35), at 145,560 to 146,660 GFF2351 Position (kb) 144 145 146Strain fitness (log2 ratio) -3 -2 -1 0 1at 143.506 kb on - strand, within GFF2348at 143.586 kb on + strand, within GFF2348at 143.814 kb on + strand, within GFF2348at 143.984 kb on - strand, within GFF2348at 143.992 kb on - strand, within GFF2348at 144.007 kb on + strand, within GFF2348at 144.022 kb on + strand, within GFF2348at 144.023 kb on - strand, within GFF2348at 144.308 kb on - strandat 144.311 kb on - strandat 144.464 kb on + strandat 144.465 kb on - strandat 144.465 kb on - strandat 144.466 kb on + strandat 144.467 kb on - strandat 144.476 kb on + strandat 144.476 kb on + strandat 144.800 kb on - strand, within GFF2349at 144.917 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.978 kb on + strand, within GFF2349at 144.979 kb on - strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 144.982 kb on + strand, within GFF2349at 145.089 kb on - strandat 145.091 kb on + strandat 145.119 kb on + strandat 145.152 kb on + strandat 145.181 kb on - strandat 145.217 kb on - strand, within GFF2350at 145.274 kb on - strand, within GFF2350at 145.293 kb on + strand, within GFF2350at 145.294 kb on - strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.295 kb on + strand, within GFF2350at 145.296 kb on - strand, within GFF2350at 145.325 kb on - strand, within GFF2350at 145.327 kb on + strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.328 kb on - strand, within GFF2350at 145.380 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.385 kb on + strand, within GFF2350at 145.386 kb on - strand, within GFF2350at 145.386 kb on - strand, within GFF2350at 145.387 kb on + strand, within GFF2350at 145.387 kb on + strand, within GFF2350at 145.388 kb on - strand, within GFF2350at 145.477 kb on + strand, within GFF2350at 145.535 kb on + strandat 145.535 kb on + strandat 145.554 kb on + strandat 145.555 kb on - strandat 145.593 kb on - strandat 145.601 kb on + strandat 145.601 kb on + strandat 145.603 kb on + strandat 145.706 kb on + strand, within GFF2351at 145.912 kb on + strand, within GFF2351at 146.008 kb on + strand, within GFF2351at 146.009 kb on - strand, within GFF2351at 146.072 kb on + strand, within GFF2351at 146.120 kb on - strand, within GFF2351

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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143,506 - GFF2348 0.45 -1.0
143,586 + GFF2348 0.51 -1.0
143,814 + GFF2348 0.68 -0.3
143,984 - GFF2348 0.81 -2.1
143,992 - GFF2348 0.81 -1.0
144,007 + GFF2348 0.83 -1.3
144,022 + GFF2348 0.84 -1.9
144,023 - GFF2348 0.84 -2.2
144,308 - -1.6
144,311 - -0.8
144,464 + +0.0
144,465 - -0.7
144,465 - -0.5
144,466 + -0.4
144,467 - -0.0
144,476 + -0.4
144,476 + +0.2
144,800 - GFF2349 0.46 -2.1
144,917 + GFF2349 0.65 -0.1
144,978 + GFF2349 0.75 -0.3
144,978 + GFF2349 0.75 -1.5
144,979 - GFF2349 0.75 -1.2
144,982 + GFF2349 0.75 -2.0
144,982 + GFF2349 0.75 -1.5
144,982 + GFF2349 0.75 -1.0
145,089 - -3.0
145,091 + -0.8
145,119 + -0.3
145,152 + -0.4
145,181 - +0.3
145,217 - GFF2350 0.17 -0.9
145,274 - GFF2350 0.33 +0.9
145,293 + GFF2350 0.39 +0.0
145,294 - GFF2350 0.39 -0.1
145,295 + GFF2350 0.39 -0.4
145,295 + GFF2350 0.39 +1.0
145,295 + GFF2350 0.39 +0.1
145,296 - GFF2350 0.39 -0.6
145,325 - GFF2350 0.47 -0.3
145,327 + GFF2350 0.48 +0.2
145,328 - GFF2350 0.48 +0.7
145,328 - GFF2350 0.48 -0.1
145,328 - GFF2350 0.48 +0.1
145,380 + GFF2350 0.63 +0.6
145,385 + GFF2350 0.64 +0.0
145,385 + GFF2350 0.64 -0.2
145,385 + GFF2350 0.64 +0.0
145,386 - GFF2350 0.64 +0.3
145,386 - GFF2350 0.64 -0.2
145,387 + GFF2350 0.65 -0.6
145,387 + GFF2350 0.65 -0.1
145,388 - GFF2350 0.65 -0.0
145,477 + GFF2350 0.90 -0.1
145,535 + -0.6
145,535 + -0.3
145,554 + -0.3
145,555 - +1.3
145,593 - +1.0
145,601 + -0.8
145,601 + -0.2
145,603 + -0.1
145,706 + GFF2351 0.13 +0.1
145,912 + GFF2351 0.32 -0.2
146,008 + GFF2351 0.41 -0.9
146,009 - GFF2351 0.41 -0.5
146,072 + GFF2351 0.47 -0.7
146,120 - GFF2351 0.51 +0.1

Or see this region's nucleotide sequence