Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2348 and GFF2349 are separated by 267 nucleotides GFF2349 and GFF2350 are separated by 15 nucleotides GFF2350 and GFF2351 are separated by 46 nucleotides
GFF2348 - Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1), at 142,904 to 144,238
GFF2348
GFF2349 - Unsaturated fatty acid biosythesis repressor FabR, TetR family, at 144,506 to 145,138
GFF2349
GFF2350 - Putative inner membrane protein, at 145,154 to 145,513
GFF2350
GFF2351 - tRNA (uracil(54)-C5)-methyltransferase (EC 2.1.1.35), at 145,560 to 146,660
GFF2351
Position (kb)
144
145
146 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 143.506 kb on - strand, within GFF2348 at 143.586 kb on + strand, within GFF2348 at 143.814 kb on + strand, within GFF2348 at 143.984 kb on - strand, within GFF2348 at 143.992 kb on - strand, within GFF2348 at 144.007 kb on + strand, within GFF2348 at 144.022 kb on + strand, within GFF2348 at 144.023 kb on - strand, within GFF2348 at 144.308 kb on - strand at 144.311 kb on - strand at 144.464 kb on + strand at 144.465 kb on - strand at 144.465 kb on - strand at 144.466 kb on + strand at 144.467 kb on - strand at 144.476 kb on + strand at 144.476 kb on + strand at 144.800 kb on - strand, within GFF2349 at 144.917 kb on + strand, within GFF2349 at 144.978 kb on + strand, within GFF2349 at 144.978 kb on + strand, within GFF2349 at 144.979 kb on - strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 144.982 kb on + strand, within GFF2349 at 145.089 kb on - strand at 145.091 kb on + strand at 145.119 kb on + strand at 145.152 kb on + strand at 145.181 kb on - strand at 145.217 kb on - strand, within GFF2350 at 145.274 kb on - strand, within GFF2350 at 145.293 kb on + strand, within GFF2350 at 145.294 kb on - strand, within GFF2350 at 145.295 kb on + strand, within GFF2350 at 145.295 kb on + strand, within GFF2350 at 145.295 kb on + strand, within GFF2350 at 145.296 kb on - strand, within GFF2350 at 145.325 kb on - strand, within GFF2350 at 145.327 kb on + strand, within GFF2350 at 145.328 kb on - strand, within GFF2350 at 145.328 kb on - strand, within GFF2350 at 145.328 kb on - strand, within GFF2350 at 145.380 kb on + strand, within GFF2350 at 145.385 kb on + strand, within GFF2350 at 145.385 kb on + strand, within GFF2350 at 145.385 kb on + strand, within GFF2350 at 145.386 kb on - strand, within GFF2350 at 145.386 kb on - strand, within GFF2350 at 145.387 kb on + strand, within GFF2350 at 145.387 kb on + strand, within GFF2350 at 145.388 kb on - strand, within GFF2350 at 145.477 kb on + strand, within GFF2350 at 145.535 kb on + strand at 145.535 kb on + strand at 145.554 kb on + strand at 145.555 kb on - strand at 145.593 kb on - strand at 145.601 kb on + strand at 145.601 kb on + strand at 145.603 kb on + strand at 145.706 kb on + strand, within GFF2351 at 145.912 kb on + strand, within GFF2351 at 146.008 kb on + strand, within GFF2351 at 146.009 kb on - strand, within GFF2351 at 146.072 kb on + strand, within GFF2351 at 146.120 kb on - strand, within GFF2351
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 143,506 - GFF2348 0.45 -1.0 143,586 + GFF2348 0.51 -1.0 143,814 + GFF2348 0.68 -0.3 143,984 - GFF2348 0.81 -2.1 143,992 - GFF2348 0.81 -1.0 144,007 + GFF2348 0.83 -1.3 144,022 + GFF2348 0.84 -1.9 144,023 - GFF2348 0.84 -2.2 144,308 - -1.6 144,311 - -0.8 144,464 + +0.0 144,465 - -0.7 144,465 - -0.5 144,466 + -0.4 144,467 - -0.0 144,476 + -0.4 144,476 + +0.2 144,800 - GFF2349 0.46 -2.1 144,917 + GFF2349 0.65 -0.1 144,978 + GFF2349 0.75 -0.3 144,978 + GFF2349 0.75 -1.5 144,979 - GFF2349 0.75 -1.2 144,982 + GFF2349 0.75 -2.0 144,982 + GFF2349 0.75 -1.5 144,982 + GFF2349 0.75 -1.0 145,089 - -3.0 145,091 + -0.8 145,119 + -0.3 145,152 + -0.4 145,181 - +0.3 145,217 - GFF2350 0.17 -0.9 145,274 - GFF2350 0.33 +0.9 145,293 + GFF2350 0.39 +0.0 145,294 - GFF2350 0.39 -0.1 145,295 + GFF2350 0.39 -0.4 145,295 + GFF2350 0.39 +1.0 145,295 + GFF2350 0.39 +0.1 145,296 - GFF2350 0.39 -0.6 145,325 - GFF2350 0.47 -0.3 145,327 + GFF2350 0.48 +0.2 145,328 - GFF2350 0.48 +0.7 145,328 - GFF2350 0.48 -0.1 145,328 - GFF2350 0.48 +0.1 145,380 + GFF2350 0.63 +0.6 145,385 + GFF2350 0.64 +0.0 145,385 + GFF2350 0.64 -0.2 145,385 + GFF2350 0.64 +0.0 145,386 - GFF2350 0.64 +0.3 145,386 - GFF2350 0.64 -0.2 145,387 + GFF2350 0.65 -0.6 145,387 + GFF2350 0.65 -0.1 145,388 - GFF2350 0.65 -0.0 145,477 + GFF2350 0.90 -0.1 145,535 + -0.6 145,535 + -0.3 145,554 + -0.3 145,555 - +1.3 145,593 - +1.0 145,601 + -0.8 145,601 + -0.2 145,603 + -0.1 145,706 + GFF2351 0.13 +0.1 145,912 + GFF2351 0.32 -0.2 146,008 + GFF2351 0.41 -0.9 146,009 - GFF2351 0.41 -0.5 146,072 + GFF2351 0.47 -0.7 146,120 - GFF2351 0.51 +0.1
Or see this region's nucleotide sequence