Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2279 and GFF2280 overlap by 4 nucleotides GFF2280 and GFF2281 are separated by 150 nucleotides GFF2281 and GFF2282 are separated by 147 nucleotides
GFF2279 - Copper sensory histidine kinase CpxA, at 67,300 to 68,673
GFF2279
GFF2280 - Copper-sensing two-component system response regulator CpxR, at 68,670 to 69,368
GFF2280
GFF2281 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 69,519 to 70,019
GFF2281
GFF2282 - Cobalt-zinc-cadmium resistance protein, at 70,167 to 71,069
GFF2282
Position (kb) 69
70
71 Strain fitness (log2 ratio) -1
0
1 at 68.612 kb on - strand at 68.612 kb on - strand at 68.692 kb on + strand at 68.769 kb on - strand, within GFF2280 at 68.873 kb on - strand, within GFF2280 at 69.063 kb on - strand, within GFF2280 at 69.144 kb on - strand, within GFF2280 at 69.186 kb on - strand, within GFF2280 at 69.373 kb on + strand at 69.395 kb on + strand at 69.414 kb on - strand at 69.426 kb on + strand at 69.427 kb on - strand at 69.437 kb on - strand at 69.593 kb on + strand, within GFF2281 at 69.593 kb on + strand, within GFF2281 at 69.635 kb on + strand, within GFF2281 at 69.651 kb on - strand, within GFF2281 at 69.651 kb on - strand, within GFF2281 at 69.705 kb on - strand, within GFF2281 at 69.705 kb on - strand, within GFF2281 at 69.705 kb on - strand, within GFF2281 at 69.705 kb on - strand, within GFF2281 at 69.879 kb on + strand, within GFF2281 at 70.115 kb on + strand at 70.115 kb on + strand at 70.137 kb on + strand at 70.137 kb on + strand at 70.138 kb on - strand at 70.166 kb on + strand at 70.263 kb on + strand, within GFF2282 at 70.281 kb on - strand, within GFF2282 at 70.428 kb on - strand, within GFF2282 at 70.469 kb on + strand, within GFF2282 at 70.551 kb on - strand, within GFF2282 at 70.553 kb on + strand, within GFF2282 at 70.554 kb on - strand, within GFF2282 at 70.554 kb on - strand, within GFF2282 at 70.582 kb on + strand, within GFF2282 at 70.617 kb on - strand, within GFF2282 at 70.740 kb on + strand, within GFF2282 at 70.742 kb on + strand, within GFF2282 at 70.751 kb on - strand, within GFF2282 at 70.751 kb on - strand, within GFF2282 at 70.762 kb on - strand, within GFF2282 at 70.780 kb on + strand, within GFF2282 at 71.009 kb on + strand at 71.009 kb on + strand at 71.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 68,612 - +0.6 68,612 - -1.0 68,692 + -0.1 68,769 - GFF2280 0.14 -0.6 68,873 - GFF2280 0.29 +0.3 69,063 - GFF2280 0.56 +0.7 69,144 - GFF2280 0.68 +0.8 69,186 - GFF2280 0.74 +0.3 69,373 + -0.1 69,395 + -0.2 69,414 - +0.5 69,426 + -0.2 69,427 - -0.2 69,437 - -0.0 69,593 + GFF2281 0.15 +0.2 69,593 + GFF2281 0.15 +0.2 69,635 + GFF2281 0.23 +0.2 69,651 - GFF2281 0.26 -0.2 69,651 - GFF2281 0.26 -0.1 69,705 - GFF2281 0.37 +0.3 69,705 - GFF2281 0.37 -0.0 69,705 - GFF2281 0.37 +0.7 69,705 - GFF2281 0.37 -0.3 69,879 + GFF2281 0.72 -0.1 70,115 + +0.7 70,115 + -0.2 70,137 + -0.1 70,137 + +0.7 70,138 - +0.2 70,166 + +0.4 70,263 + GFF2282 0.11 +0.3 70,281 - GFF2282 0.13 -0.8 70,428 - GFF2282 0.29 +0.1 70,469 + GFF2282 0.33 +0.1 70,551 - GFF2282 0.43 -0.2 70,553 + GFF2282 0.43 +0.8 70,554 - GFF2282 0.43 +0.4 70,554 - GFF2282 0.43 -0.0 70,582 + GFF2282 0.46 -0.1 70,617 - GFF2282 0.50 +0.3 70,740 + GFF2282 0.63 -0.0 70,742 + GFF2282 0.64 +0.2 70,751 - GFF2282 0.65 +0.2 70,751 - GFF2282 0.65 +0.0 70,762 - GFF2282 0.66 +0.4 70,780 + GFF2282 0.68 -0.2 71,009 + +0.1 71,009 + +0.2 71,010 - -0.2
Or see this region's nucleotide sequence