Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2268 and GFF2269 are separated by 3 nucleotides GFF2269 and GFF2270 are separated by 34 nucleotides GFF2270 and GFF2271 are separated by 194 nucleotides GFF2271 and GFF2272 are separated by 36 nucleotides GFF2272 and GFF2273 are separated by 157 nucleotides
GFF2268 - L-rhamnose-proton symporter, at 59,823 to 60,857
GFF2268
GFF2269 - hypothetical protein, at 60,861 to 60,992
GFF2269
GFF2270 - hypothetical protein, at 61,027 to 61,140
GFF2270
GFF2271 - hypothetical protein, at 61,335 to 61,451
GFF2271
GFF2272 - Oligogalacturonide-Rhamnogalacturonide-specific porin, at 61,488 to 62,159
GFF2272
GFF2273 - Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC, at 62,317 to 63,624
GFF2273
Position (kb) 61
62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 60.488 kb on + strand, within GFF2268 at 60.501 kb on - strand, within GFF2268 at 60.501 kb on - strand, within GFF2268 at 60.531 kb on - strand, within GFF2268 at 60.589 kb on + strand, within GFF2268 at 60.594 kb on - strand, within GFF2268 at 60.594 kb on - strand, within GFF2268 at 60.594 kb on - strand, within GFF2268 at 60.667 kb on + strand, within GFF2268 at 60.790 kb on + strand at 60.938 kb on + strand, within GFF2269 at 61.078 kb on + strand, within GFF2270 at 61.602 kb on + strand, within GFF2272 at 61.719 kb on - strand, within GFF2272 at 61.736 kb on + strand, within GFF2272 at 61.801 kb on - strand, within GFF2272 at 61.801 kb on - strand, within GFF2272 at 61.873 kb on - strand, within GFF2272 at 61.920 kb on - strand, within GFF2272 at 62.144 kb on - strand at 62.319 kb on - strand at 62.366 kb on + strand at 62.466 kb on - strand, within GFF2273 at 62.468 kb on - strand, within GFF2273 at 62.513 kb on + strand, within GFF2273 at 62.513 kb on + strand, within GFF2273 at 62.513 kb on + strand, within GFF2273 at 62.691 kb on + strand, within GFF2273 at 62.713 kb on - strand, within GFF2273 at 62.855 kb on - strand, within GFF2273 at 62.861 kb on + strand, within GFF2273 at 62.979 kb on + strand, within GFF2273 at 63.046 kb on - strand, within GFF2273 at 63.136 kb on - strand, within GFF2273
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 60,488 + GFF2268 0.64 -0.1 60,501 - GFF2268 0.66 -2.1 60,501 - GFF2268 0.66 +0.0 60,531 - GFF2268 0.68 +0.8 60,589 + GFF2268 0.74 -0.1 60,594 - GFF2268 0.74 +0.2 60,594 - GFF2268 0.74 +0.4 60,594 - GFF2268 0.74 +0.0 60,667 + GFF2268 0.82 -0.3 60,790 + -1.5 60,938 + GFF2269 0.58 -0.3 61,078 + GFF2270 0.45 +0.1 61,602 + GFF2272 0.17 -0.2 61,719 - GFF2272 0.34 -0.1 61,736 + GFF2272 0.37 -1.3 61,801 - GFF2272 0.47 +0.3 61,801 - GFF2272 0.47 -0.2 61,873 - GFF2272 0.57 -0.2 61,920 - GFF2272 0.64 +0.4 62,144 - -1.0 62,319 - -0.2 62,366 + -0.2 62,466 - GFF2273 0.11 -0.6 62,468 - GFF2273 0.12 +0.2 62,513 + GFF2273 0.15 +0.1 62,513 + GFF2273 0.15 +1.7 62,513 + GFF2273 0.15 +0.1 62,691 + GFF2273 0.29 +0.2 62,713 - GFF2273 0.30 +0.4 62,855 - GFF2273 0.41 +0.1 62,861 + GFF2273 0.42 +1.6 62,979 + GFF2273 0.51 -0.6 63,046 - GFF2273 0.56 +0.0 63,136 - GFF2273 0.63 +0.4
Or see this region's nucleotide sequence