Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2240 and GFF2241 overlap by 7 nucleotides GFF2241 and GFF2242 overlap by 4 nucleotides GFF2242 and GFF2243 are separated by 44 nucleotides
GFF2240 - Alpha-D-glucose-1-phosphatase, at 35,673 to 36,272
GFF2240
GFF2241 - Inner membrane protein YihY, formerly thought to be RNase BN, at 36,266 to 37,138
GFF2241
GFF2242 - D-tyrosyl-tRNA(Tyr) deacylase (EC 3.6.1.n1), at 37,135 to 37,572
GFF2242
GFF2243 - GNAT family acetyltransferase YiiD potentially involved in tRNA processing, at 37,617 to 38,558
GFF2243
Position (kb) 37
38 Strain fitness (log2 ratio) -1
0
1 at 36.182 kb on + strand, within GFF2240 at 36.183 kb on - strand, within GFF2240 at 36.230 kb on + strand at 36.265 kb on + strand at 36.331 kb on - strand at 36.358 kb on + strand, within GFF2241 at 36.359 kb on - strand, within GFF2241 at 36.359 kb on - strand, within GFF2241 at 36.359 kb on - strand, within GFF2241 at 36.396 kb on + strand, within GFF2241 at 36.397 kb on - strand, within GFF2241 at 36.406 kb on - strand, within GFF2241 at 36.502 kb on + strand, within GFF2241 at 36.502 kb on + strand, within GFF2241 at 36.536 kb on - strand, within GFF2241 at 36.617 kb on + strand, within GFF2241 at 36.618 kb on - strand, within GFF2241 at 36.618 kb on - strand, within GFF2241 at 36.677 kb on + strand, within GFF2241 at 36.693 kb on - strand, within GFF2241 at 36.804 kb on + strand, within GFF2241 at 36.805 kb on - strand, within GFF2241 at 36.860 kb on - strand, within GFF2241 at 36.957 kb on - strand, within GFF2241 at 36.958 kb on + strand, within GFF2241 at 36.989 kb on + strand, within GFF2241 at 37.030 kb on - strand, within GFF2241 at 37.045 kb on + strand, within GFF2241 at 37.045 kb on + strand, within GFF2241 at 37.046 kb on - strand, within GFF2241 at 37.046 kb on - strand, within GFF2241 at 37.046 kb on - strand, within GFF2241 at 37.046 kb on - strand, within GFF2241 at 37.047 kb on + strand, within GFF2241 at 37.068 kb on + strand at 37.145 kb on + strand at 37.224 kb on - strand, within GFF2242 at 37.294 kb on - strand, within GFF2242 at 37.332 kb on - strand, within GFF2242 at 37.386 kb on + strand, within GFF2242 at 37.487 kb on + strand, within GFF2242 at 37.537 kb on - strand at 37.569 kb on - strand at 37.611 kb on - strand at 37.611 kb on - strand at 37.620 kb on + strand at 37.780 kb on + strand, within GFF2243 at 37.801 kb on - strand, within GFF2243 at 37.802 kb on + strand, within GFF2243 at 37.803 kb on - strand, within GFF2243 at 37.835 kb on + strand, within GFF2243 at 37.835 kb on + strand, within GFF2243 at 37.836 kb on - strand, within GFF2243 at 37.843 kb on + strand, within GFF2243 at 37.843 kb on + strand, within GFF2243 at 37.844 kb on - strand, within GFF2243 at 38.000 kb on + strand, within GFF2243 at 38.000 kb on + strand, within GFF2243 at 38.001 kb on - strand, within GFF2243 at 38.003 kb on + strand, within GFF2243 at 38.003 kb on + strand, within GFF2243 at 38.043 kb on - strand, within GFF2243 at 38.050 kb on + strand, within GFF2243 at 38.346 kb on - strand, within GFF2243 at 38.507 kb on - strand at 38.567 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 36,182 + GFF2240 0.85 +0.1 36,183 - GFF2240 0.85 +0.2 36,230 + +0.3 36,265 + +0.4 36,331 - -0.3 36,358 + GFF2241 0.11 -0.0 36,359 - GFF2241 0.11 -0.5 36,359 - GFF2241 0.11 +0.1 36,359 - GFF2241 0.11 +0.1 36,396 + GFF2241 0.15 -0.3 36,397 - GFF2241 0.15 +0.5 36,406 - GFF2241 0.16 -0.2 36,502 + GFF2241 0.27 -0.3 36,502 + GFF2241 0.27 +0.1 36,536 - GFF2241 0.31 -0.3 36,617 + GFF2241 0.40 +1.2 36,618 - GFF2241 0.40 -0.0 36,618 - GFF2241 0.40 -0.0 36,677 + GFF2241 0.47 +0.3 36,693 - GFF2241 0.49 +0.2 36,804 + GFF2241 0.62 +0.4 36,805 - GFF2241 0.62 +0.2 36,860 - GFF2241 0.68 +0.3 36,957 - GFF2241 0.79 -0.0 36,958 + GFF2241 0.79 +0.2 36,989 + GFF2241 0.83 -0.4 37,030 - GFF2241 0.88 +0.8 37,045 + GFF2241 0.89 +0.0 37,045 + GFF2241 0.89 -0.3 37,046 - GFF2241 0.89 +1.3 37,046 - GFF2241 0.89 +0.1 37,046 - GFF2241 0.89 +0.1 37,046 - GFF2241 0.89 -0.2 37,047 + GFF2241 0.89 +0.4 37,068 + -0.3 37,145 + -0.0 37,224 - GFF2242 0.20 +0.1 37,294 - GFF2242 0.36 -0.7 37,332 - GFF2242 0.45 -1.1 37,386 + GFF2242 0.57 -0.2 37,487 + GFF2242 0.80 +0.5 37,537 - +0.2 37,569 - +0.0 37,611 - +0.6 37,611 - -1.0 37,620 + +0.0 37,780 + GFF2243 0.17 -1.2 37,801 - GFF2243 0.20 -0.0 37,802 + GFF2243 0.20 +0.1 37,803 - GFF2243 0.20 -0.9 37,835 + GFF2243 0.23 +0.2 37,835 + GFF2243 0.23 -0.2 37,836 - GFF2243 0.23 -0.2 37,843 + GFF2243 0.24 -0.1 37,843 + GFF2243 0.24 +0.9 37,844 - GFF2243 0.24 +0.4 38,000 + GFF2243 0.41 -0.1 38,000 + GFF2243 0.41 +0.6 38,001 - GFF2243 0.41 -0.3 38,003 + GFF2243 0.41 -1.5 38,003 + GFF2243 0.41 -0.0 38,043 - GFF2243 0.45 -0.1 38,050 + GFF2243 0.46 +0.2 38,346 - GFF2243 0.77 -1.0 38,507 - -1.0 38,567 - +0.7
Or see this region's nucleotide sequence