Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2223
Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Dictyostellum sp.mixed culture-2 |
---|---|---|---|---|---|
remove | |||||
15,446 | + | GFF2222 | 0.65 | -1.3 | |
15,447 | - | GFF2222 | 0.66 | -0.3 | |
15,501 | - | GFF2222 | 0.69 | -0.1 | |
15,632 | - | GFF2222 | 0.79 | +0.4 | |
15,933 | - | +0.1 | |||
15,939 | - | -0.0 | |||
15,939 | - | +0.1 | |||
15,939 | - | +0.2 | |||
16,015 | - | -0.3 | |||
16,178 | + | +0.1 | |||
16,359 | - | +0.8 | |||
16,377 | - | -0.6 | |||
16,470 | - | -1.5 | |||
16,470 | - | -3.0 | |||
16,470 | - | -1.2 | |||
16,529 | + | GFF2223 | 0.12 | -0.3 | |
16,865 | - | GFF2223 | 0.31 | -0.9 | |
16,956 | + | GFF2223 | 0.36 | -0.2 | |
17,031 | - | GFF2223 | 0.40 | +0.3 | |
17,231 | + | GFF2223 | 0.51 | -0.6 | |
17,618 | - | GFF2223 | 0.72 | -2.0 | |
17,618 | - | GFF2223 | 0.72 | -1.4 | |
17,831 | + | GFF2223 | 0.83 | -0.4 | |
17,911 | + | GFF2223 | 0.88 | -1.0 | |
18,129 | + | +0.4 | |||
18,242 | + | +0.3 | |||
18,242 | + | +0.5 | |||
18,341 | + | GFF2224 | 0.21 | -0.3 | |
18,397 | + | GFF2224 | 0.29 | -0.1 | |
18,398 | - | GFF2224 | 0.29 | +0.6 | |
18,422 | + | GFF2224 | 0.32 | +0.1 | |
18,423 | - | GFF2224 | 0.32 | +0.5 | |
18,423 | - | GFF2224 | 0.32 | -0.2 | |
18,467 | + | GFF2224 | 0.38 | -0.0 | |
18,475 | - | GFF2224 | 0.39 | -0.0 | |
18,481 | - | GFF2224 | 0.40 | -1.0 | |
18,554 | + | GFF2224 | 0.50 | +0.7 | |
18,596 | + | GFF2224 | 0.56 | -0.2 | |
18,657 | + | GFF2224 | 0.64 | -0.1 | |
18,657 | + | GFF2224 | 0.64 | -0.1 | |
18,710 | + | GFF2224 | 0.71 | +0.4 | |
18,713 | - | GFF2224 | 0.72 | -0.6 | |
18,761 | - | GFF2224 | 0.78 | +0.0 | |
18,763 | + | GFF2224 | 0.79 | +0.2 | |
18,906 | + | +0.5 | |||
18,991 | - | -0.3 |
Or see this region's nucleotide sequence