Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2211

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2209 and GFF2210 overlap by 19 nucleotidesGFF2210 and GFF2211 are separated by 69 nucleotidesGFF2211 and GFF2212 are separated by 76 nucleotides GFF2209 - Molybdopterin-guanine dinucleotide biosynthesis protein MobB, at 608 to 1,138 GFF2209 GFF2210 - Molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 1,120 to 1,704 GFF2210 GFF2211 - Protein yihD, at 1,774 to 2,043 GFF2211 GFF2212 - YihE protein, a ser/thr kinase implicated in LPS synthesis and Cpx signalling, at 2,120 to 3,106 GFF2212 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.818 kb on + strand, within GFF2209at 0.830 kb on - strand, within GFF2209at 0.956 kb on - strand, within GFF2209at 0.967 kb on - strand, within GFF2209at 0.971 kb on - strand, within GFF2209at 0.971 kb on - strand, within GFF2209at 1.009 kb on + strand, within GFF2209at 1.016 kb on - strand, within GFF2209at 1.112 kb on + strandat 1.182 kb on + strand, within GFF2210at 1.183 kb on - strand, within GFF2210at 1.183 kb on - strand, within GFF2210at 1.259 kb on + strand, within GFF2210at 1.259 kb on + strand, within GFF2210at 1.259 kb on + strand, within GFF2210at 1.259 kb on + strand, within GFF2210at 1.260 kb on - strand, within GFF2210at 1.260 kb on - strand, within GFF2210at 1.290 kb on + strand, within GFF2210at 1.291 kb on - strand, within GFF2210at 1.435 kb on + strand, within GFF2210at 1.560 kb on + strand, within GFF2210at 1.684 kb on + strandat 1.685 kb on - strandat 1.687 kb on + strandat 1.688 kb on - strandat 1.688 kb on - strandat 1.720 kb on + strandat 1.720 kb on + strandat 1.842 kb on + strand, within GFF2211at 1.927 kb on + strand, within GFF2211at 1.928 kb on - strand, within GFF2211at 2.034 kb on + strandat 2.445 kb on + strand, within GFF2212at 2.502 kb on - strand, within GFF2212at 2.661 kb on + strand, within GFF2212at 2.661 kb on + strand, within GFF2212at 2.662 kb on - strand, within GFF2212at 2.945 kb on + strand, within GFF2212at 2.946 kb on - strand, within GFF2212

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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818 + GFF2209 0.40 -0.1
830 - GFF2209 0.42 +0.8
956 - GFF2209 0.66 +0.2
967 - GFF2209 0.68 +1.3
971 - GFF2209 0.68 +0.9
971 - GFF2209 0.68 +0.0
1,009 + GFF2209 0.76 -0.3
1,016 - GFF2209 0.77 -0.7
1,112 + +1.0
1,182 + GFF2210 0.11 -0.4
1,183 - GFF2210 0.11 +0.0
1,183 - GFF2210 0.11 +0.3
1,259 + GFF2210 0.24 -1.2
1,259 + GFF2210 0.24 +0.1
1,259 + GFF2210 0.24 -0.3
1,259 + GFF2210 0.24 -0.2
1,260 - GFF2210 0.24 -0.2
1,260 - GFF2210 0.24 -0.5
1,290 + GFF2210 0.29 -0.2
1,291 - GFF2210 0.29 +1.3
1,435 + GFF2210 0.54 -1.8
1,560 + GFF2210 0.75 -0.3
1,684 + -0.5
1,685 - -0.0
1,687 + +0.1
1,688 - +0.4
1,688 - +1.7
1,720 + +0.2
1,720 + -1.1
1,842 + GFF2211 0.25 -0.3
1,927 + GFF2211 0.57 +1.0
1,928 - GFF2211 0.57 +0.2
2,034 + -0.2
2,445 + GFF2212 0.33 -0.7
2,502 - GFF2212 0.39 -0.4
2,661 + GFF2212 0.55 -0.1
2,661 + GFF2212 0.55 +0.7
2,662 - GFF2212 0.55 +0.0
2,945 + GFF2212 0.84 -0.7
2,946 - GFF2212 0.84 -0.6

Or see this region's nucleotide sequence