Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2205 and GFF2206 overlap by 4 nucleotides GFF2206 and GFF2207 are separated by 215 nucleotides GFF2207 and GFF2208 are separated by 291 nucleotides
GFF2205 - putative DNA-binding protein, at 3,557 to 3,904
GFF2205
GFF2206 - FIG01045224: hypothetical protein, at 3,901 to 4,212
GFF2206
GFF2207 - hypothetical protein, at 4,428 to 4,580
GFF2207
GFF2208 - DNA-damage-inducible protein I, at 4,872 to 5,105
GFF2208
Position (kb) 4
5
6 Strain fitness (log2 ratio) -1
0
1 at 3.948 kb on + strand, within GFF2206 at 4.042 kb on - strand, within GFF2206 at 4.154 kb on - strand, within GFF2206 at 4.213 kb on + strand at 4.213 kb on + strand at 4.213 kb on + strand at 4.251 kb on + strand at 4.255 kb on + strand at 4.256 kb on - strand at 4.356 kb on + strand at 4.356 kb on + strand at 4.390 kb on + strand at 4.468 kb on - strand, within GFF2207 at 4.473 kb on + strand, within GFF2207 at 4.473 kb on + strand, within GFF2207 at 4.474 kb on - strand, within GFF2207 at 4.474 kb on - strand, within GFF2207 at 4.480 kb on - strand, within GFF2207 at 4.513 kb on - strand, within GFF2207 at 4.531 kb on + strand, within GFF2207 at 4.531 kb on + strand, within GFF2207 at 4.532 kb on - strand, within GFF2207 at 4.568 kb on + strand at 4.570 kb on + strand at 4.578 kb on + strand at 4.644 kb on + strand at 4.645 kb on - strand at 4.645 kb on - strand at 4.677 kb on + strand at 4.726 kb on - strand at 4.825 kb on - strand at 4.845 kb on - strand at 4.861 kb on + strand at 4.871 kb on + strand at 5.042 kb on + strand, within GFF2208 at 5.052 kb on - strand, within GFF2208 at 5.053 kb on + strand, within GFF2208 at 5.101 kb on - strand at 5.103 kb on + strand at 5.215 kb on - strand at 5.250 kb on - strand at 5.265 kb on - strand at 5.266 kb on + strand at 5.266 kb on + strand at 5.266 kb on + strand at 5.266 kb on + strand at 5.266 kb on + strand at 5.267 kb on - strand at 5.285 kb on - strand at 5.323 kb on - strand at 5.323 kb on - strand at 5.323 kb on - strand at 5.325 kb on - strand at 5.383 kb on - strand at 5.390 kb on + strand at 5.390 kb on + strand at 5.432 kb on + strand at 5.432 kb on + strand at 5.465 kb on + strand at 5.502 kb on - strand at 5.689 kb on - strand at 5.754 kb on - strand at 5.783 kb on - strand at 5.824 kb on + strand at 5.866 kb on - strand at 5.923 kb on + strand at 5.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 3,948 + GFF2206 0.15 -0.9 4,042 - GFF2206 0.45 -0.2 4,154 - GFF2206 0.81 +0.3 4,213 + -0.8 4,213 + -1.0 4,213 + -0.4 4,251 + -0.7 4,255 + -0.5 4,256 - -0.1 4,356 + +0.2 4,356 + -0.8 4,390 + -1.2 4,468 - GFF2207 0.26 +0.5 4,473 + GFF2207 0.29 -0.8 4,473 + GFF2207 0.29 -1.7 4,474 - GFF2207 0.30 -0.9 4,474 - GFF2207 0.30 -0.4 4,480 - GFF2207 0.34 +0.8 4,513 - GFF2207 0.56 +0.1 4,531 + GFF2207 0.67 -0.9 4,531 + GFF2207 0.67 -0.5 4,532 - GFF2207 0.68 -0.6 4,568 + +0.3 4,570 + -0.7 4,578 + -1.0 4,644 + -0.2 4,645 - -0.8 4,645 - -0.2 4,677 + -0.7 4,726 - -0.4 4,825 - -0.5 4,845 - +0.4 4,861 + +0.2 4,871 + +0.3 5,042 + GFF2208 0.73 +1.4 5,052 - GFF2208 0.77 +0.5 5,053 + GFF2208 0.77 +1.1 5,101 - +0.5 5,103 + +0.7 5,215 - +0.6 5,250 - +0.0 5,265 - +0.1 5,266 + +0.8 5,266 + +0.6 5,266 + +1.1 5,266 + +0.4 5,266 + +0.8 5,267 - +0.9 5,285 - +1.3 5,323 - +0.7 5,323 - +1.0 5,323 - +0.6 5,325 - +1.2 5,383 - +1.1 5,390 + +1.0 5,390 + +0.1 5,432 + +0.4 5,432 + -0.5 5,465 + -1.3 5,502 - +0.4 5,689 - -0.8 5,754 - -0.3 5,783 - +0.1 5,824 + -0.8 5,866 - +1.2 5,923 + +1.2 5,924 - -0.4
Or see this region's nucleotide sequence