Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2200

Experiment: Dictyostellum sp.mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2199 and GFF2200 are separated by 302 nucleotidesGFF2200 and GFF2201 are separated by 582 nucleotidesGFF2201 and GFF2202 overlap by 10 nucleotides GFF2199 - FIG01045596: hypothetical protein, at 156 to 314 GFF2199 GFF2200 - Phage CI-like repressor, at 617 to 823 GFF2200 GFF2201 - putative DNA-binding protein, at 1,406 to 1,726 GFF2201 GFF2202 - hypothetical protein, at 1,717 to 1,833 GFF2202 Position (kb) 0 1Strain fitness (log2 ratio) -2 -1 0 1at 0.153 kb on + strandat 0.154 kb on - strandat 0.181 kb on + strand, within GFF2199at 0.181 kb on + strand, within GFF2199at 0.206 kb on - strand, within GFF2199at 0.261 kb on + strand, within GFF2199at 0.295 kb on + strand, within GFF2199at 0.341 kb on + strandat 0.580 kb on + strandat 0.692 kb on - strand, within GFF2200at 0.692 kb on - strand, within GFF2200at 0.958 kb on + strandat 0.958 kb on + strandat 0.959 kb on - strandat 1.385 kb on - strandat 1.397 kb on + strandat 1.398 kb on - strandat 1.462 kb on - strand, within GFF2201at 1.553 kb on - strand, within GFF2201at 1.800 kb on + strand, within GFF2202at 1.816 kb on + strand, within GFF2202

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Per-strain Table

Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2
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153 + -0.2
154 - +0.7
181 + GFF2199 0.16 +0.7
181 + GFF2199 0.16 +0.0
206 - GFF2199 0.31 +1.5
261 + GFF2199 0.66 -1.0
295 + GFF2199 0.87 +0.7
341 + +0.4
580 + -0.2
692 - GFF2200 0.36 -0.7
692 - GFF2200 0.36 -1.0
958 + -0.3
958 + -0.9
959 - -1.8
1,385 - -0.1
1,397 + +0.2
1,398 - +0.5
1,462 - GFF2201 0.17 +1.1
1,553 - GFF2201 0.46 -0.6
1,800 + GFF2202 0.71 -0.1
1,816 + GFF2202 0.85 +0.2

Or see this region's nucleotide sequence