Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2129 and GFF2130 are separated by 392 nucleotides GFF2130 and GFF2131 are separated by 0 nucleotides GFF2131 and GFF2132 are separated by 112 nucleotides
GFF2129 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 16,354 to 16,824
GFF2129
GFF2130 - FIG001196: Membrane protein YedZ, at 17,217 to 17,816
GFF2130
GFF2131 - Putative sulfite oxidase subunit YedY, at 17,817 to 18,821
GFF2131
GFF2132 - Alcohol dehydrogenase (EC 1.1.1.1), at 18,934 to 19,908
GFF2132
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 17.082 kb on + strand at 17.096 kb on - strand at 17.101 kb on + strand at 17.102 kb on - strand at 17.271 kb on + strand at 17.272 kb on - strand at 17.282 kb on - strand, within GFF2130 at 17.323 kb on + strand, within GFF2130 at 17.324 kb on - strand, within GFF2130 at 17.328 kb on + strand, within GFF2130 at 17.329 kb on - strand, within GFF2130 at 17.353 kb on + strand, within GFF2130 at 17.448 kb on - strand, within GFF2130 at 17.508 kb on - strand, within GFF2130 at 17.534 kb on - strand, within GFF2130 at 17.534 kb on - strand, within GFF2130 at 17.534 kb on - strand, within GFF2130 at 17.542 kb on - strand, within GFF2130 at 17.601 kb on + strand, within GFF2130 at 17.989 kb on + strand, within GFF2131 at 17.999 kb on - strand, within GFF2131 at 18.071 kb on + strand, within GFF2131 at 18.080 kb on + strand, within GFF2131 at 18.080 kb on + strand, within GFF2131 at 18.088 kb on + strand, within GFF2131 at 18.143 kb on + strand, within GFF2131 at 18.144 kb on - strand, within GFF2131 at 18.148 kb on + strand, within GFF2131 at 18.217 kb on + strand, within GFF2131 at 18.260 kb on + strand, within GFF2131 at 18.261 kb on - strand, within GFF2131 at 18.261 kb on - strand, within GFF2131 at 18.300 kb on - strand, within GFF2131 at 18.331 kb on - strand, within GFF2131 at 18.335 kb on + strand, within GFF2131 at 18.335 kb on + strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.336 kb on - strand, within GFF2131 at 18.338 kb on - strand, within GFF2131 at 18.339 kb on + strand, within GFF2131 at 18.339 kb on - strand, within GFF2131 at 18.340 kb on - strand, within GFF2131 at 18.402 kb on - strand, within GFF2131 at 18.402 kb on - strand, within GFF2131 at 18.411 kb on + strand, within GFF2131 at 18.430 kb on - strand, within GFF2131 at 18.450 kb on - strand, within GFF2131 at 18.450 kb on - strand, within GFF2131 at 18.534 kb on - strand, within GFF2131 at 18.563 kb on - strand, within GFF2131 at 18.575 kb on + strand, within GFF2131 at 18.715 kb on - strand, within GFF2131 at 18.736 kb on - strand at 18.810 kb on + strand at 18.811 kb on - strand at 19.015 kb on - strand at 19.037 kb on + strand, within GFF2132 at 19.037 kb on + strand, within GFF2132 at 19.038 kb on - strand, within GFF2132 at 19.038 kb on - strand, within GFF2132 at 19.114 kb on + strand, within GFF2132 at 19.115 kb on - strand, within GFF2132 at 19.134 kb on + strand, within GFF2132 at 19.153 kb on - strand, within GFF2132 at 19.211 kb on + strand, within GFF2132 at 19.211 kb on + strand, within GFF2132 at 19.276 kb on + strand, within GFF2132 at 19.348 kb on - strand, within GFF2132 at 19.405 kb on - strand, within GFF2132 at 19.658 kb on - strand, within GFF2132 at 19.660 kb on + strand, within GFF2132 at 19.660 kb on + strand, within GFF2132 at 19.770 kb on + strand, within GFF2132 at 19.786 kb on - strand, within GFF2132
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 17,082 + -0.6 17,096 - -0.2 17,101 + +0.2 17,102 - +0.1 17,271 + +1.0 17,272 - +0.0 17,282 - GFF2130 0.11 -0.6 17,323 + GFF2130 0.18 +0.1 17,324 - GFF2130 0.18 +0.3 17,328 + GFF2130 0.18 -0.3 17,329 - GFF2130 0.19 -1.2 17,353 + GFF2130 0.23 -0.6 17,448 - GFF2130 0.39 +0.4 17,508 - GFF2130 0.48 -0.2 17,534 - GFF2130 0.53 -0.3 17,534 - GFF2130 0.53 -1.6 17,534 - GFF2130 0.53 +0.2 17,542 - GFF2130 0.54 +0.4 17,601 + GFF2130 0.64 +1.0 17,989 + GFF2131 0.17 +0.3 17,999 - GFF2131 0.18 -0.0 18,071 + GFF2131 0.25 -0.2 18,080 + GFF2131 0.26 +0.2 18,080 + GFF2131 0.26 +0.8 18,088 + GFF2131 0.27 +0.6 18,143 + GFF2131 0.32 -0.2 18,144 - GFF2131 0.33 +0.6 18,148 + GFF2131 0.33 -0.0 18,217 + GFF2131 0.40 -0.2 18,260 + GFF2131 0.44 +0.4 18,261 - GFF2131 0.44 -0.7 18,261 - GFF2131 0.44 -0.1 18,300 - GFF2131 0.48 +0.6 18,331 - GFF2131 0.51 +0.6 18,335 + GFF2131 0.52 -1.2 18,335 + GFF2131 0.52 -0.1 18,336 - GFF2131 0.52 +0.0 18,336 - GFF2131 0.52 +0.2 18,336 - GFF2131 0.52 -0.1 18,336 - GFF2131 0.52 +0.7 18,336 - GFF2131 0.52 +0.1 18,336 - GFF2131 0.52 +0.1 18,338 - GFF2131 0.52 +0.4 18,339 + GFF2131 0.52 +0.3 18,339 - GFF2131 0.52 +0.2 18,340 - GFF2131 0.52 -0.1 18,402 - GFF2131 0.58 -0.1 18,402 - GFF2131 0.58 +0.1 18,411 + GFF2131 0.59 -0.2 18,430 - GFF2131 0.61 +0.8 18,450 - GFF2131 0.63 +0.6 18,450 - GFF2131 0.63 -0.2 18,534 - GFF2131 0.71 +0.1 18,563 - GFF2131 0.74 +1.4 18,575 + GFF2131 0.75 +0.1 18,715 - GFF2131 0.89 +0.0 18,736 - -1.0 18,810 + +0.4 18,811 - +0.2 19,015 - -0.3 19,037 + GFF2132 0.11 +0.5 19,037 + GFF2132 0.11 -1.0 19,038 - GFF2132 0.11 +0.6 19,038 - GFF2132 0.11 +0.0 19,114 + GFF2132 0.18 +0.2 19,115 - GFF2132 0.19 +0.1 19,134 + GFF2132 0.21 +0.8 19,153 - GFF2132 0.22 -0.1 19,211 + GFF2132 0.28 +0.4 19,211 + GFF2132 0.28 -0.1 19,276 + GFF2132 0.35 -0.2 19,348 - GFF2132 0.42 -0.3 19,405 - GFF2132 0.48 -0.3 19,658 - GFF2132 0.74 +0.4 19,660 + GFF2132 0.74 -0.0 19,660 + GFF2132 0.74 -0.2 19,770 + GFF2132 0.86 +1.4 19,786 - GFF2132 0.87 +0.1
Or see this region's nucleotide sequence