Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2107 and GFF2108 are separated by 31 nucleotides GFF2108 and GFF2109 overlap by 1 nucleotides GFF2109 and GFF2110 overlap by 4 nucleotides GFF2110 and GFF2111 are separated by 142 nucleotides GFF2111 and GFF2112 are separated by 217 nucleotides
GFF2107 - RNA polymerase sigma factor RpoE, at 16,681 to 17,256
GFF2107
GFF2108 - Sigma factor RpoE negative regulatory protein RseA, at 17,288 to 17,938
GFF2108
GFF2109 - Sigma factor RpoE negative regulatory protein RseB precursor, at 17,938 to 18,894
GFF2109
GFF2110 - Sigma factor RpoE regulatory protein RseC, at 18,891 to 19,370
GFF2110
GFF2111 - FIG00643583: hypothetical protein, at 19,513 to 19,650
GFF2111
GFF2112 - Phage integrase, at 19,868 to 21,097
GFF2112
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 17.785 kb on - strand, within GFF2108 at 18.212 kb on - strand, within GFF2109 at 18.253 kb on + strand, within GFF2109 at 18.255 kb on + strand, within GFF2109 at 18.284 kb on - strand, within GFF2109 at 18.310 kb on + strand, within GFF2109 at 18.313 kb on + strand, within GFF2109 at 18.313 kb on + strand, within GFF2109 at 18.322 kb on - strand, within GFF2109 at 18.403 kb on + strand, within GFF2109 at 18.404 kb on - strand, within GFF2109 at 18.406 kb on - strand, within GFF2109 at 18.790 kb on + strand, within GFF2109 at 18.793 kb on - strand, within GFF2109 at 18.793 kb on - strand, within GFF2109 at 18.888 kb on - strand at 19.037 kb on + strand, within GFF2110 at 19.038 kb on - strand, within GFF2110 at 19.137 kb on - strand, within GFF2110 at 19.137 kb on - strand, within GFF2110 at 19.491 kb on - strand at 19.491 kb on - strand at 19.496 kb on - strand at 19.515 kb on - strand at 19.523 kb on - strand at 19.523 kb on - strand at 19.600 kb on + strand, within GFF2111 at 19.601 kb on - strand, within GFF2111 at 19.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 17,785 - GFF2108 0.76 +0.0 18,212 - GFF2109 0.29 -0.9 18,253 + GFF2109 0.33 +0.4 18,255 + GFF2109 0.33 -0.1 18,284 - GFF2109 0.36 +0.2 18,310 + GFF2109 0.39 -0.1 18,313 + GFF2109 0.39 -0.3 18,313 + GFF2109 0.39 +0.1 18,322 - GFF2109 0.40 +0.3 18,403 + GFF2109 0.49 -0.7 18,404 - GFF2109 0.49 +0.1 18,406 - GFF2109 0.49 -1.3 18,790 + GFF2109 0.89 +0.6 18,793 - GFF2109 0.89 -1.6 18,793 - GFF2109 0.89 -1.3 18,888 - +0.1 19,037 + GFF2110 0.30 -0.3 19,038 - GFF2110 0.31 -0.5 19,137 - GFF2110 0.51 -0.6 19,137 - GFF2110 0.51 +0.8 19,491 - -0.9 19,491 - -1.2 19,496 - +0.1 19,515 - -0.3 19,523 - -0.6 19,523 - -0.2 19,600 + GFF2111 0.63 -0.5 19,601 - GFF2111 0.64 -0.2 19,883 - +0.6
Or see this region's nucleotide sequence