Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF207 and GFF208 are separated by 57 nucleotides GFF208 and GFF209 are separated by 62 nucleotides
GFF207 - Crotonobetainyl-CoA dehydrogenase (EC 1.3.99.-), at 202,439 to 203,581
GFF207
GFF208 - Crotonobetainyl-CoA:carnitine CoA-transferase (EC 2.8.3.-), at 203,639 to 204,910
GFF208
GFF209 - Crotonobetaine carnitine-CoA ligase (EC 6.3.2.-), at 204,973 to 206,526
GFF209
Position (kb) 203
204
205 Strain fitness (log2 ratio) -1
0
1
2 at 202.701 kb on - strand, within GFF207 at 202.807 kb on + strand, within GFF207 at 202.808 kb on - strand, within GFF207 at 202.841 kb on - strand, within GFF207 at 202.841 kb on - strand, within GFF207 at 202.857 kb on - strand, within GFF207 at 202.894 kb on + strand, within GFF207 at 202.904 kb on - strand, within GFF207 at 202.919 kb on + strand, within GFF207 at 202.919 kb on + strand, within GFF207 at 202.922 kb on - strand, within GFF207 at 202.928 kb on + strand, within GFF207 at 202.929 kb on - strand, within GFF207 at 203.183 kb on + strand, within GFF207 at 203.183 kb on + strand, within GFF207 at 203.184 kb on - strand, within GFF207 at 203.393 kb on + strand, within GFF207 at 203.602 kb on + strand at 203.603 kb on - strand at 203.662 kb on - strand at 203.865 kb on - strand, within GFF208 at 204.077 kb on + strand, within GFF208 at 204.110 kb on + strand, within GFF208 at 204.110 kb on + strand, within GFF208 at 204.111 kb on - strand, within GFF208 at 204.188 kb on + strand, within GFF208 at 204.200 kb on + strand, within GFF208 at 204.293 kb on + strand, within GFF208 at 204.321 kb on - strand, within GFF208 at 204.365 kb on - strand, within GFF208 at 204.390 kb on - strand, within GFF208 at 204.408 kb on - strand, within GFF208 at 204.425 kb on + strand, within GFF208 at 204.641 kb on - strand, within GFF208 at 204.683 kb on - strand, within GFF208 at 204.692 kb on + strand, within GFF208 at 204.692 kb on + strand, within GFF208 at 204.745 kb on + strand, within GFF208 at 204.865 kb on + strand at 204.868 kb on + strand at 204.869 kb on - strand at 205.086 kb on + strand at 205.086 kb on + strand at 205.086 kb on + strand at 205.091 kb on - strand at 205.249 kb on - strand, within GFF209 at 205.330 kb on + strand, within GFF209 at 205.340 kb on - strand, within GFF209 at 205.349 kb on + strand, within GFF209 at 205.380 kb on + strand, within GFF209 at 205.380 kb on + strand, within GFF209 at 205.381 kb on - strand, within GFF209 at 205.439 kb on + strand, within GFF209 at 205.440 kb on - strand, within GFF209 at 205.470 kb on + strand, within GFF209 at 205.547 kb on + strand, within GFF209 at 205.547 kb on + strand, within GFF209 at 205.558 kb on + strand, within GFF209 at 205.559 kb on - strand, within GFF209 at 205.583 kb on - strand, within GFF209 at 205.709 kb on + strand, within GFF209 at 205.750 kb on - strand, within GFF209
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 202,701 - GFF207 0.23 +0.8 202,807 + GFF207 0.32 +0.5 202,808 - GFF207 0.32 +0.6 202,841 - GFF207 0.35 -0.3 202,841 - GFF207 0.35 +0.1 202,857 - GFF207 0.37 +0.1 202,894 + GFF207 0.40 +0.1 202,904 - GFF207 0.41 -0.6 202,919 + GFF207 0.42 -0.3 202,919 + GFF207 0.42 +0.4 202,922 - GFF207 0.42 +1.1 202,928 + GFF207 0.43 +0.1 202,929 - GFF207 0.43 +0.3 203,183 + GFF207 0.65 +1.1 203,183 + GFF207 0.65 +0.1 203,184 - GFF207 0.65 +2.7 203,393 + GFF207 0.83 +0.4 203,602 + +1.3 203,603 - -0.5 203,662 - -0.4 203,865 - GFF208 0.18 +0.9 204,077 + GFF208 0.34 +0.6 204,110 + GFF208 0.37 +0.3 204,110 + GFF208 0.37 +1.2 204,111 - GFF208 0.37 +0.5 204,188 + GFF208 0.43 -0.6 204,200 + GFF208 0.44 +0.4 204,293 + GFF208 0.51 +0.4 204,321 - GFF208 0.54 -0.5 204,365 - GFF208 0.57 -0.0 204,390 - GFF208 0.59 +0.3 204,408 - GFF208 0.60 -0.0 204,425 + GFF208 0.62 +0.3 204,641 - GFF208 0.79 +1.2 204,683 - GFF208 0.82 +0.5 204,692 + GFF208 0.83 -0.9 204,692 + GFF208 0.83 -0.3 204,745 + GFF208 0.87 +0.3 204,865 + -0.9 204,868 + +0.3 204,869 - +0.5 205,086 + -1.2 205,086 + +0.1 205,086 + +1.0 205,091 - +0.0 205,249 - GFF209 0.18 -0.1 205,330 + GFF209 0.23 +0.8 205,340 - GFF209 0.24 -0.0 205,349 + GFF209 0.24 -0.2 205,380 + GFF209 0.26 +0.0 205,380 + GFF209 0.26 -0.2 205,381 - GFF209 0.26 +0.3 205,439 + GFF209 0.30 +0.6 205,440 - GFF209 0.30 +0.5 205,470 + GFF209 0.32 +0.2 205,547 + GFF209 0.37 +0.2 205,547 + GFF209 0.37 -0.6 205,558 + GFF209 0.38 -0.2 205,559 - GFF209 0.38 -0.1 205,583 - GFF209 0.39 -1.4 205,709 + GFF209 0.47 +0.4 205,750 - GFF209 0.50 +0.2
Or see this region's nucleotide sequence