Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2051 and GFF2052 are separated by 14 nucleotides GFF2052 and GFF2053 are separated by 58 nucleotides GFF2053 and GFF2054 are separated by 12 nucleotides
GFF2051 - Predicted transcriptional regulator of pyridoxine metabolism, at 16,522 to 17,814
GFF2051
GFF2052 - Putative amidotransferase, at 17,829 to 18,548
GFF2052
GFF2053 - hypothetical protein, at 18,607 to 18,987
GFF2053
GFF2054 - putative membrane carboxypeptidase, at 19,000 to 19,539
GFF2054
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 16.971 kb on + strand, within GFF2051 at 17.055 kb on + strand, within GFF2051 at 17.261 kb on + strand, within GFF2051 at 17.351 kb on + strand, within GFF2051 at 17.351 kb on + strand, within GFF2051 at 17.394 kb on + strand, within GFF2051 at 17.394 kb on + strand, within GFF2051 at 17.513 kb on - strand, within GFF2051 at 17.513 kb on - strand, within GFF2051 at 17.646 kb on + strand, within GFF2051 at 17.739 kb on + strand at 17.928 kb on + strand, within GFF2052 at 18.182 kb on + strand, within GFF2052 at 18.183 kb on - strand, within GFF2052 at 18.183 kb on - strand, within GFF2052 at 18.264 kb on - strand, within GFF2052 at 18.325 kb on + strand, within GFF2052 at 18.366 kb on - strand, within GFF2052 at 18.447 kb on - strand, within GFF2052 at 19.068 kb on - strand, within GFF2054 at 19.078 kb on + strand, within GFF2054 at 19.199 kb on - strand, within GFF2054 at 19.300 kb on + strand, within GFF2054 at 19.324 kb on + strand, within GFF2054 at 19.324 kb on + strand, within GFF2054 at 19.325 kb on - strand, within GFF2054 at 19.385 kb on + strand, within GFF2054 at 19.394 kb on + strand, within GFF2054 at 19.428 kb on - strand, within GFF2054 at 19.439 kb on - strand, within GFF2054 at 19.439 kb on - strand, within GFF2054 at 19.439 kb on - strand, within GFF2054 at 19.504 kb on + strand at 19.538 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 16,971 + GFF2051 0.35 -0.2 17,055 + GFF2051 0.41 +0.2 17,261 + GFF2051 0.57 +0.1 17,351 + GFF2051 0.64 -0.3 17,351 + GFF2051 0.64 -0.5 17,394 + GFF2051 0.67 -0.5 17,394 + GFF2051 0.67 -0.0 17,513 - GFF2051 0.77 +0.1 17,513 - GFF2051 0.77 -0.2 17,646 + GFF2051 0.87 -0.1 17,739 + +1.4 17,928 + GFF2052 0.14 -0.5 18,182 + GFF2052 0.49 +0.4 18,183 - GFF2052 0.49 -1.7 18,183 - GFF2052 0.49 +0.3 18,264 - GFF2052 0.60 +0.5 18,325 + GFF2052 0.69 -0.0 18,366 - GFF2052 0.75 -1.2 18,447 - GFF2052 0.86 -0.2 19,068 - GFF2054 0.13 -0.1 19,078 + GFF2054 0.14 -0.2 19,199 - GFF2054 0.37 +0.3 19,300 + GFF2054 0.56 +0.4 19,324 + GFF2054 0.60 +0.6 19,324 + GFF2054 0.60 +0.0 19,325 - GFF2054 0.60 -0.0 19,385 + GFF2054 0.71 +0.1 19,394 + GFF2054 0.73 +0.3 19,428 - GFF2054 0.79 +0.3 19,439 - GFF2054 0.81 +0.3 19,439 - GFF2054 0.81 -1.8 19,439 - GFF2054 0.81 +0.3 19,504 + +0.1 19,538 - +0.2
Or see this region's nucleotide sequence