Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1902 and GFF1903 are separated by 48 nucleotides GFF1903 and GFF1904 overlap by 8 nucleotides GFF1904 and GFF1905 overlap by 4 nucleotides
GFF1902 - Putative S-transferase, at 97,970 to 99,490
GFF1902
GFF1903 - Transketolase, C-terminal section (EC 2.2.1.1), at 99,539 to 100,492
GFF1903
GFF1904 - Transketolase, N-terminal section (EC 2.2.1.1), at 100,485 to 101,315
GFF1904
GFF1905 - FIG00732228: membrane protein, at 101,312 to 102,703
GFF1905
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2 at 99.529 kb on - strand at 99.540 kb on + strand at 99.887 kb on - strand, within GFF1903 at 99.887 kb on - strand, within GFF1903 at 99.887 kb on - strand, within GFF1903 at 99.893 kb on - strand, within GFF1903 at 99.954 kb on + strand, within GFF1903 at 99.958 kb on + strand, within GFF1903 at 99.959 kb on - strand, within GFF1903 at 99.983 kb on - strand, within GFF1903 at 100.023 kb on - strand, within GFF1903 at 100.111 kb on + strand, within GFF1903 at 100.174 kb on + strand, within GFF1903 at 100.240 kb on + strand, within GFF1903 at 100.240 kb on + strand, within GFF1903 at 100.241 kb on - strand, within GFF1903 at 100.307 kb on - strand, within GFF1903 at 100.374 kb on - strand, within GFF1903 at 100.393 kb on + strand, within GFF1903 at 100.466 kb on - strand at 100.487 kb on - strand at 100.672 kb on - strand, within GFF1904 at 100.922 kb on + strand, within GFF1904 at 100.949 kb on + strand, within GFF1904 at 101.048 kb on + strand, within GFF1904 at 101.095 kb on + strand, within GFF1904 at 101.127 kb on + strand, within GFF1904 at 101.558 kb on + strand, within GFF1905 at 101.561 kb on + strand, within GFF1905 at 101.561 kb on + strand, within GFF1905 at 101.569 kb on + strand, within GFF1905 at 101.769 kb on + strand, within GFF1905 at 101.769 kb on + strand, within GFF1905 at 101.886 kb on - strand, within GFF1905 at 101.931 kb on + strand, within GFF1905 at 102.001 kb on + strand, within GFF1905 at 102.029 kb on - strand, within GFF1905 at 102.176 kb on - strand, within GFF1905 at 102.187 kb on + strand, within GFF1905 at 102.187 kb on + strand, within GFF1905 at 102.190 kb on - strand, within GFF1905
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 99,529 - -0.7 99,540 + -0.8 99,887 - GFF1903 0.36 -2.0 99,887 - GFF1903 0.36 -0.7 99,887 - GFF1903 0.36 +0.7 99,893 - GFF1903 0.37 +0.2 99,954 + GFF1903 0.44 +0.5 99,958 + GFF1903 0.44 -0.4 99,959 - GFF1903 0.44 +0.1 99,983 - GFF1903 0.47 -0.1 100,023 - GFF1903 0.51 -0.7 100,111 + GFF1903 0.60 -0.8 100,174 + GFF1903 0.67 +0.6 100,240 + GFF1903 0.73 +0.1 100,240 + GFF1903 0.73 +2.1 100,241 - GFF1903 0.74 +0.4 100,307 - GFF1903 0.81 -0.6 100,374 - GFF1903 0.88 -0.2 100,393 + GFF1903 0.90 -0.9 100,466 - +0.1 100,487 - +0.3 100,672 - GFF1904 0.23 +0.2 100,922 + GFF1904 0.53 +0.5 100,949 + GFF1904 0.56 +0.4 101,048 + GFF1904 0.68 +1.1 101,095 + GFF1904 0.73 +0.5 101,127 + GFF1904 0.77 -2.0 101,558 + GFF1905 0.18 -0.7 101,561 + GFF1905 0.18 -0.5 101,561 + GFF1905 0.18 -0.2 101,569 + GFF1905 0.18 +0.5 101,769 + GFF1905 0.33 -1.0 101,769 + GFF1905 0.33 -0.5 101,886 - GFF1905 0.41 +0.2 101,931 + GFF1905 0.44 +0.3 102,001 + GFF1905 0.49 +0.2 102,029 - GFF1905 0.52 +0.0 102,176 - GFF1905 0.62 -0.3 102,187 + GFF1905 0.63 +0.0 102,187 + GFF1905 0.63 +0.9 102,190 - GFF1905 0.63 -0.3
Or see this region's nucleotide sequence