Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1886 and GFF1887 are separated by 30 nucleotides GFF1887 and GFF1888 overlap by 4 nucleotides GFF1888 and GFF1889 are separated by 2 nucleotides
GFF1886 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 78,287 to 81,013
GFF1886
GFF1887 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 81,044 to 82,381
GFF1887
GFF1888 - NADH-ubiquinone oxidoreductase chain E (EC 1.6.5.3), at 82,378 to 82,878
GFF1888
GFF1889 - NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3), at 82,881 to 84,683
GFF1889
Position (kb)
81
82
83 Strain fitness (log2 ratio)
-2
-1
0
1 at 80.199 kb on + strand, within GFF1886 at 80.199 kb on + strand, within GFF1886 at 80.199 kb on + strand, within GFF1886 at 80.200 kb on - strand, within GFF1886 at 80.309 kb on - strand, within GFF1886 at 80.476 kb on - strand, within GFF1886 at 80.665 kb on + strand, within GFF1886 at 80.786 kb on - strand at 80.791 kb on + strand at 80.919 kb on + strand at 80.927 kb on - strand at 80.927 kb on - strand at 80.927 kb on - strand at 80.955 kb on - strand at 81.145 kb on + strand at 81.145 kb on + strand at 81.319 kb on + strand, within GFF1887 at 81.319 kb on + strand, within GFF1887 at 81.960 kb on - strand, within GFF1887 at 81.974 kb on - strand, within GFF1887 at 81.996 kb on + strand, within GFF1887 at 81.997 kb on - strand, within GFF1887 at 81.997 kb on - strand, within GFF1887 at 82.036 kb on + strand, within GFF1887 at 82.036 kb on + strand, within GFF1887 at 82.037 kb on - strand, within GFF1887 at 82.086 kb on + strand, within GFF1887 at 82.653 kb on - strand, within GFF1888 at 82.653 kb on - strand, within GFF1888 at 82.712 kb on + strand, within GFF1888 at 82.813 kb on + strand, within GFF1888 at 82.814 kb on - strand, within GFF1888 at 82.882 kb on + strand at 82.901 kb on + strand at 83.021 kb on + strand at 83.022 kb on - strand at 83.045 kb on - strand at 83.047 kb on + strand at 83.226 kb on - strand, within GFF1889 at 83.293 kb on + strand, within GFF1889 at 83.293 kb on + strand, within GFF1889 at 83.293 kb on + strand, within GFF1889 at 83.293 kb on + strand, within GFF1889 at 83.294 kb on - strand, within GFF1889 at 83.366 kb on + strand, within GFF1889
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 80,199 + GFF1886 0.70 -0.8 80,199 + GFF1886 0.70 -1.3 80,199 + GFF1886 0.70 -1.8 80,200 - GFF1886 0.70 +0.3 80,309 - GFF1886 0.74 +0.5 80,476 - GFF1886 0.80 -0.8 80,665 + GFF1886 0.87 -0.8 80,786 - -2.1 80,791 + -0.5 80,919 + -1.9 80,927 - -1.8 80,927 - -1.4 80,927 - -0.2 80,955 - -0.7 81,145 + -0.4 81,145 + -2.3 81,319 + GFF1887 0.21 -2.0 81,319 + GFF1887 0.21 -1.1 81,960 - GFF1887 0.68 -0.3 81,974 - GFF1887 0.70 -1.2 81,996 + GFF1887 0.71 -0.7 81,997 - GFF1887 0.71 -1.0 81,997 - GFF1887 0.71 -1.9 82,036 + GFF1887 0.74 -1.4 82,036 + GFF1887 0.74 -0.9 82,037 - GFF1887 0.74 -1.2 82,086 + GFF1887 0.78 -1.0 82,653 - GFF1888 0.55 -0.5 82,653 - GFF1888 0.55 -0.1 82,712 + GFF1888 0.67 -2.2 82,813 + GFF1888 0.87 -1.0 82,814 - GFF1888 0.87 -1.5 82,882 + -1.9 82,901 + -1.1 83,021 + -1.8 83,022 - -1.6 83,045 - -1.2 83,047 + -0.9 83,226 - GFF1889 0.19 -0.7 83,293 + GFF1889 0.23 -0.8 83,293 + GFF1889 0.23 -1.7 83,293 + GFF1889 0.23 -1.0 83,293 + GFF1889 0.23 -0.8 83,294 - GFF1889 0.23 -0.8 83,366 + GFF1889 0.27 -1.0
Or see this region's nucleotide sequence