Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1887

Experiment: Dictyostellum sp.mixed culture-2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Dictyostellum sp.mixed culture-2
80,199	+		GFF1886	0.70	-0.8
80,199	+		GFF1886	0.70	-1.3
80,199	+		GFF1886	0.70	-1.8
80,200	-		GFF1886	0.70	+0.3
80,309	-		GFF1886	0.74	+0.5
80,476	-		GFF1886	0.80	-0.8
80,665	+		GFF1886	0.87	-0.8
80,786	-				-2.1
80,791	+				-0.5
80,919	+				-1.9
80,927	-				-1.8
80,927	-				-1.4
80,927	-				-0.2
80,955	-				-0.7
81,145	+				-0.4
81,145	+				-2.3
81,319	+		GFF1887	0.21	-2.0
81,319	+		GFF1887	0.21	-1.1
81,960	-		GFF1887	0.68	-0.3
81,974	-		GFF1887	0.70	-1.2
81,996	+		GFF1887	0.71	-0.7
81,997	-		GFF1887	0.71	-1.0
81,997	-		GFF1887	0.71	-1.9
82,036	+		GFF1887	0.74	-1.4
82,036	+		GFF1887	0.74	-0.9
82,037	-		GFF1887	0.74	-1.2
82,086	+		GFF1887	0.78	-1.0
82,653	-		GFF1888	0.55	-0.5
82,653	-		GFF1888	0.55	-0.1
82,712	+		GFF1888	0.67	-2.2
82,813	+		GFF1888	0.87	-1.0
82,814	-		GFF1888	0.87	-1.5
82,882	+				-1.9
82,901	+				-1.1
83,021	+				-1.8
83,022	-				-1.6
83,045	-				-1.2
83,047	+				-0.9
83,226	-		GFF1889	0.19	-0.7
83,293	+		GFF1889	0.23	-0.8
83,293	+		GFF1889	0.23	-1.7
83,293	+		GFF1889	0.23	-1.0
83,293	+		GFF1889	0.23	-0.8
83,294	-		GFF1889	0.23	-0.8
83,366	+		GFF1889	0.27	-1.0