Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1884 and GFF1885 are separated by 14 nucleotides GFF1885 and GFF1886 overlap by 4 nucleotides GFF1886 and GFF1887 are separated by 30 nucleotides
GFF1884 - NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3), at 76,756 to 77,298
GFF1884
GFF1885 - NADH-ubiquinone oxidoreductase chain H (EC 1.6.5.3), at 77,313 to 78,290
GFF1885
GFF1886 - NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3), at 78,287 to 81,013
GFF1886
GFF1887 - NADH-ubiquinone oxidoreductase chain F (EC 1.6.5.3), at 81,044 to 82,381
GFF1887
Position (kb) 78
79
80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 77.400 kb on + strand at 77.401 kb on - strand at 77.411 kb on - strand, within GFF1885 at 77.566 kb on + strand, within GFF1885 at 77.766 kb on - strand, within GFF1885 at 77.769 kb on - strand, within GFF1885 at 77.824 kb on + strand, within GFF1885 at 77.870 kb on - strand, within GFF1885 at 77.975 kb on + strand, within GFF1885 at 78.152 kb on - strand, within GFF1885 at 78.429 kb on + strand at 78.429 kb on + strand at 78.512 kb on - strand at 78.567 kb on + strand, within GFF1886 at 78.567 kb on + strand, within GFF1886 at 78.568 kb on - strand, within GFF1886 at 78.568 kb on - strand, within GFF1886 at 78.580 kb on + strand, within GFF1886 at 78.580 kb on + strand, within GFF1886 at 79.082 kb on - strand, within GFF1886 at 79.082 kb on - strand, within GFF1886 at 79.099 kb on - strand, within GFF1886 at 79.099 kb on - strand, within GFF1886 at 79.578 kb on - strand, within GFF1886 at 79.578 kb on - strand, within GFF1886 at 79.612 kb on + strand, within GFF1886 at 79.612 kb on + strand, within GFF1886 at 79.612 kb on + strand, within GFF1886 at 79.757 kb on - strand, within GFF1886 at 79.757 kb on - strand, within GFF1886 at 79.929 kb on + strand, within GFF1886 at 80.001 kb on + strand, within GFF1886 at 80.199 kb on + strand, within GFF1886 at 80.199 kb on + strand, within GFF1886 at 80.199 kb on + strand, within GFF1886 at 80.200 kb on - strand, within GFF1886 at 80.309 kb on - strand, within GFF1886 at 80.476 kb on - strand, within GFF1886 at 80.665 kb on + strand, within GFF1886 at 80.786 kb on - strand at 80.791 kb on + strand at 80.919 kb on + strand at 80.927 kb on - strand at 80.927 kb on - strand at 80.927 kb on - strand at 80.955 kb on - strand at 81.145 kb on + strand at 81.145 kb on + strand at 81.319 kb on + strand, within GFF1887 at 81.319 kb on + strand, within GFF1887 at 81.960 kb on - strand, within GFF1887 at 81.974 kb on - strand, within GFF1887 at 81.996 kb on + strand, within GFF1887 at 81.997 kb on - strand, within GFF1887 at 81.997 kb on - strand, within GFF1887
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 77,400 + -1.7 77,401 - -0.3 77,411 - GFF1885 0.10 -1.4 77,566 + GFF1885 0.26 -1.5 77,766 - GFF1885 0.46 -2.9 77,769 - GFF1885 0.47 -0.9 77,824 + GFF1885 0.52 -2.0 77,870 - GFF1885 0.57 -1.5 77,975 + GFF1885 0.68 -0.5 78,152 - GFF1885 0.86 -1.6 78,429 + -1.4 78,429 + -1.6 78,512 - -0.8 78,567 + GFF1886 0.10 -0.3 78,567 + GFF1886 0.10 -0.3 78,568 - GFF1886 0.10 -2.4 78,568 - GFF1886 0.10 -1.3 78,580 + GFF1886 0.11 +0.5 78,580 + GFF1886 0.11 -1.2 79,082 - GFF1886 0.29 -1.0 79,082 - GFF1886 0.29 -1.7 79,099 - GFF1886 0.30 -1.3 79,099 - GFF1886 0.30 -2.2 79,578 - GFF1886 0.47 -2.3 79,578 - GFF1886 0.47 -1.1 79,612 + GFF1886 0.49 -1.8 79,612 + GFF1886 0.49 -1.8 79,612 + GFF1886 0.49 -2.1 79,757 - GFF1886 0.54 -1.8 79,757 - GFF1886 0.54 +0.4 79,929 + GFF1886 0.60 -1.4 80,001 + GFF1886 0.63 -1.5 80,199 + GFF1886 0.70 -0.8 80,199 + GFF1886 0.70 -1.3 80,199 + GFF1886 0.70 -1.8 80,200 - GFF1886 0.70 +0.3 80,309 - GFF1886 0.74 +0.5 80,476 - GFF1886 0.80 -0.8 80,665 + GFF1886 0.87 -0.8 80,786 - -2.1 80,791 + -0.5 80,919 + -1.9 80,927 - -1.8 80,927 - -1.4 80,927 - -0.2 80,955 - -0.7 81,145 + -0.4 81,145 + -2.3 81,319 + GFF1887 0.21 -2.0 81,319 + GFF1887 0.21 -1.1 81,960 - GFF1887 0.68 -0.3 81,974 - GFF1887 0.70 -1.2 81,996 + GFF1887 0.71 -0.7 81,997 - GFF1887 0.71 -1.0 81,997 - GFF1887 0.71 -1.9
Or see this region's nucleotide sequence