Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1868 and GFF1869 are separated by 14 nucleotides GFF1869 and GFF1870 overlap by 4 nucleotides GFF1870 and GFF1871 are separated by 85 nucleotides
GFF1868 - Naphthoate synthase (EC 4.1.3.36), at 60,392 to 61,249
GFF1868
GFF1869 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate synthase (EC 4.2.99.20), at 61,264 to 62,022
GFF1869
GFF1870 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9), at 62,019 to 63,689
GFF1870
GFF1871 - Menaquinone-specific isochorismate synthase (EC 5.4.4.2), at 63,775 to 65,070
GFF1871
Position (kb) 62
63
64 Strain fitness (log2 ratio) -1
0
1
2 at 61.034 kb on - strand, within GFF1868 at 61.409 kb on - strand, within GFF1869 at 61.799 kb on + strand, within GFF1869 at 61.812 kb on + strand, within GFF1869 at 61.892 kb on + strand, within GFF1869 at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.022 kb on + strand at 62.178 kb on - strand at 62.224 kb on + strand, within GFF1870 at 62.224 kb on + strand, within GFF1870 at 62.224 kb on + strand, within GFF1870 at 62.325 kb on + strand, within GFF1870 at 62.462 kb on - strand, within GFF1870 at 62.650 kb on - strand, within GFF1870 at 62.650 kb on - strand, within GFF1870 at 62.828 kb on + strand, within GFF1870 at 62.935 kb on - strand, within GFF1870 at 63.167 kb on - strand, within GFF1870 at 63.548 kb on + strand at 63.745 kb on + strand at 63.799 kb on - strand at 63.824 kb on - strand at 63.916 kb on + strand, within GFF1871 at 63.917 kb on - strand, within GFF1871 at 63.953 kb on + strand, within GFF1871 at 63.954 kb on - strand, within GFF1871 at 63.971 kb on + strand, within GFF1871 at 63.971 kb on + strand, within GFF1871 at 64.107 kb on + strand, within GFF1871 at 64.219 kb on - strand, within GFF1871 at 64.275 kb on + strand, within GFF1871 at 64.276 kb on - strand, within GFF1871 at 64.478 kb on - strand, within GFF1871 at 64.623 kb on + strand, within GFF1871 at 64.624 kb on - strand, within GFF1871
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 61,034 - GFF1868 0.75 +0.1 61,409 - GFF1869 0.19 -0.0 61,799 + GFF1869 0.70 -0.8 61,812 + GFF1869 0.72 +1.9 61,892 + GFF1869 0.83 -0.3 62,022 + +1.2 62,022 + -0.6 62,022 + +0.1 62,022 + +0.3 62,022 + -0.1 62,178 - +0.3 62,224 + GFF1870 0.12 -0.2 62,224 + GFF1870 0.12 -0.2 62,224 + GFF1870 0.12 -0.6 62,325 + GFF1870 0.18 -0.2 62,462 - GFF1870 0.27 -0.5 62,650 - GFF1870 0.38 -0.2 62,650 - GFF1870 0.38 -1.4 62,828 + GFF1870 0.48 -0.4 62,935 - GFF1870 0.55 +0.1 63,167 - GFF1870 0.69 -0.1 63,548 + +0.3 63,745 + +0.0 63,799 - +0.2 63,824 - -0.3 63,916 + GFF1871 0.11 -0.7 63,917 - GFF1871 0.11 -0.3 63,953 + GFF1871 0.14 +0.4 63,954 - GFF1871 0.14 -1.1 63,971 + GFF1871 0.15 +0.0 63,971 + GFF1871 0.15 +0.4 64,107 + GFF1871 0.26 +0.7 64,219 - GFF1871 0.34 +0.3 64,275 + GFF1871 0.39 +0.0 64,276 - GFF1871 0.39 -0.3 64,478 - GFF1871 0.54 +0.8 64,623 + GFF1871 0.65 +0.6 64,624 - GFF1871 0.66 +0.1
Or see this region's nucleotide sequence