Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1863 and GFF1864 overlap by 1 nucleotides GFF1864 and GFF1865 overlap by 6 nucleotides GFF1865 and GFF1866 are separated by 154 nucleotides GFF1866 and GFF1867 overlap by 4 nucleotides GFF1867 and GFF1868 overlap by 1 nucleotides
GFF1863 - Polymyxin resistance protein PmrL, sucrose-6 phosphate hydrolase, at 57,004 to 57,339
GFF1863
GFF1864 - Polymyxin resistance protein PmrM, at 57,339 to 57,716
GFF1864
GFF1865 - Polymyxin resistance protein PmrD, at 57,711 to 57,911
GFF1865
GFF1866 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 58,066 to 59,433
GFF1866
GFF1867 - O-succinylbenzoate synthase (EC 4.2.1.113), at 59,430 to 60,392
GFF1867
GFF1868 - Naphthoate synthase (EC 4.1.3.36), at 60,392 to 61,249
GFF1868
Position (kb) 58
59
60 Strain fitness (log2 ratio) -2
-1
0
1 at 57.137 kb on + strand, within GFF1863 at 57.487 kb on + strand, within GFF1864 at 57.755 kb on - strand, within GFF1865 at 57.856 kb on - strand, within GFF1865 at 57.856 kb on - strand, within GFF1865 at 58.119 kb on + strand at 58.235 kb on + strand, within GFF1866 at 58.236 kb on - strand, within GFF1866 at 58.606 kb on - strand, within GFF1866 at 58.779 kb on + strand, within GFF1866 at 58.780 kb on - strand, within GFF1866 at 58.857 kb on + strand, within GFF1866 at 58.858 kb on - strand, within GFF1866 at 58.858 kb on - strand, within GFF1866 at 58.858 kb on - strand, within GFF1866 at 58.860 kb on + strand, within GFF1866 at 58.861 kb on - strand, within GFF1866 at 58.861 kb on - strand, within GFF1866 at 58.971 kb on + strand, within GFF1866 at 58.971 kb on + strand, within GFF1866 at 58.971 kb on + strand, within GFF1866 at 58.972 kb on - strand, within GFF1866 at 58.972 kb on - strand, within GFF1866 at 58.972 kb on - strand, within GFF1866 at 58.975 kb on + strand, within GFF1866 at 58.976 kb on - strand, within GFF1866 at 58.976 kb on - strand, within GFF1866 at 58.976 kb on - strand, within GFF1866 at 58.976 kb on - strand, within GFF1866 at 59.075 kb on - strand, within GFF1866 at 59.288 kb on - strand, within GFF1866 at 59.523 kb on - strand at 59.664 kb on - strand, within GFF1867 at 59.685 kb on - strand, within GFF1867 at 59.864 kb on - strand, within GFF1867 at 59.864 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.202 kb on - strand, within GFF1867 at 60.302 kb on - strand at 60.376 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 57,137 + GFF1863 0.40 -1.5 57,487 + GFF1864 0.39 -2.7 57,755 - GFF1865 0.22 -0.5 57,856 - GFF1865 0.72 -0.3 57,856 - GFF1865 0.72 -0.4 58,119 + -0.6 58,235 + GFF1866 0.12 -1.2 58,236 - GFF1866 0.12 -0.2 58,606 - GFF1866 0.39 -0.0 58,779 + GFF1866 0.52 +0.5 58,780 - GFF1866 0.52 +0.1 58,857 + GFF1866 0.58 +0.6 58,858 - GFF1866 0.58 +0.8 58,858 - GFF1866 0.58 +1.5 58,858 - GFF1866 0.58 -0.1 58,860 + GFF1866 0.58 -0.7 58,861 - GFF1866 0.58 +0.3 58,861 - GFF1866 0.58 +0.1 58,971 + GFF1866 0.66 +0.1 58,971 + GFF1866 0.66 -1.5 58,971 + GFF1866 0.66 +0.1 58,972 - GFF1866 0.66 -0.3 58,972 - GFF1866 0.66 +0.7 58,972 - GFF1866 0.66 +0.6 58,975 + GFF1866 0.66 -0.3 58,976 - GFF1866 0.67 -0.0 58,976 - GFF1866 0.67 -0.3 58,976 - GFF1866 0.67 +0.0 58,976 - GFF1866 0.67 -0.0 59,075 - GFF1866 0.74 +0.1 59,288 - GFF1866 0.89 -0.4 59,523 - +0.2 59,664 - GFF1867 0.24 -1.2 59,685 - GFF1867 0.26 +0.6 59,864 - GFF1867 0.45 -0.4 59,864 - GFF1867 0.45 -1.0 60,202 - GFF1867 0.80 +0.0 60,202 - GFF1867 0.80 -0.3 60,202 - GFF1867 0.80 -0.5 60,302 - -0.1 60,376 - -0.1
Or see this region's nucleotide sequence