Experiment: Dictyostellum sp.mixed culture-2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1845 and GFF1846 overlap by 11 nucleotides GFF1846 and GFF1847 overlap by 4 nucleotides
GFF1845 - Anaerobic glycerol-3-phosphate dehydrogenase subunit A (EC 1.1.5.3), at 36,629 to 38,257
GFF1845
GFF1846 - Anaerobic glycerol-3-phosphate dehydrogenase subunit B (EC 1.1.5.3), at 38,247 to 39,506
GFF1846
GFF1847 - Anaerobic glycerol-3-phosphate dehydrogenase subunit C (EC 1.1.5.3), at 39,503 to 40,693
GFF1847
Position (kb) 38
39
40 Strain fitness (log2 ratio) -1
0
1
2 at 37.451 kb on + strand, within GFF1845 at 37.673 kb on - strand, within GFF1845 at 38.154 kb on + strand at 38.155 kb on - strand at 38.155 kb on - strand at 38.155 kb on - strand at 38.155 kb on - strand at 38.267 kb on + strand at 38.472 kb on + strand, within GFF1846 at 38.502 kb on - strand, within GFF1846 at 38.531 kb on + strand, within GFF1846 at 38.619 kb on - strand, within GFF1846 at 38.779 kb on + strand, within GFF1846 at 38.860 kb on - strand, within GFF1846 at 38.878 kb on + strand, within GFF1846 at 39.170 kb on - strand, within GFF1846 at 39.279 kb on + strand, within GFF1846 at 39.382 kb on - strand at 39.388 kb on + strand at 39.389 kb on - strand at 39.389 kb on - strand at 39.418 kb on + strand at 39.418 kb on + strand at 39.418 kb on + strand at 39.419 kb on - strand at 39.531 kb on + strand at 39.674 kb on - strand, within GFF1847 at 39.724 kb on + strand, within GFF1847 at 40.135 kb on + strand, within GFF1847 at 40.204 kb on + strand, within GFF1847 at 40.234 kb on + strand, within GFF1847 at 40.235 kb on - strand, within GFF1847 at 40.301 kb on - strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.385 kb on + strand, within GFF1847 at 40.391 kb on - strand, within GFF1847 at 40.473 kb on + strand, within GFF1847
Per-strain Table
Position Strand Gene LocusTag Fraction Dictyostellum sp.mixed culture-2 remove 37,451 + GFF1845 0.50 +0.9 37,673 - GFF1845 0.64 -0.7 38,154 + +0.2 38,155 - -0.2 38,155 - -0.4 38,155 - +0.2 38,155 - +0.0 38,267 + -0.4 38,472 + GFF1846 0.18 +0.2 38,502 - GFF1846 0.20 +0.2 38,531 + GFF1846 0.23 +0.4 38,619 - GFF1846 0.30 -1.0 38,779 + GFF1846 0.42 +0.4 38,860 - GFF1846 0.49 -0.4 38,878 + GFF1846 0.50 +0.3 39,170 - GFF1846 0.73 +0.8 39,279 + GFF1846 0.82 +2.1 39,382 - -0.5 39,388 + -0.1 39,389 - +0.5 39,389 - +0.5 39,418 + -0.5 39,418 + +1.5 39,418 + +0.9 39,419 - +0.5 39,531 + +0.1 39,674 - GFF1847 0.14 +0.9 39,724 + GFF1847 0.19 -0.8 40,135 + GFF1847 0.53 +0.6 40,204 + GFF1847 0.59 +0.9 40,234 + GFF1847 0.61 -1.3 40,235 - GFF1847 0.61 +0.0 40,301 - GFF1847 0.67 -0.1 40,385 + GFF1847 0.74 -0.7 40,385 + GFF1847 0.74 -0.3 40,385 + GFF1847 0.74 +0.1 40,391 - GFF1847 0.75 -0.5 40,473 + GFF1847 0.81 -1.1
Or see this region's nucleotide sequence